Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SNORA21-201ENST00000362423 132 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RNA5SP346-201ENST00000363541 121 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RN7SKP81-201ENST00000365603 331 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RBBP4P4-201ENST00000398588 1289 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SNRPBP1-201ENST00000443634 282 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC122713.1-201ENST00000518368 1015 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL138895.2-201ENST00000603019 178 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 CUBNP3-201ENST00000457461 1784 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC105114.1-201ENST00000624795 1862 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC089998.1-201ENST00000548575 3141 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SELENOWP1-201ENST00000322792 252 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 NENFP1-201ENST00000419476 466 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL645936.1-201ENST00000441979 518 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SNX18P26-201ENST00000458433 740 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ATP5LP3-201ENST00000514223 304 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RNA5SP362-201ENST00000516048 118 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 OR1N1-202ENST00000619659 939 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC073488.3-201ENST00000631611 778 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 AC073342.2-201ENST00000595842 1800 ntBASIC1.9□□□□□ -2.11
SYNE1Q8NF91 SLC7A6-201ENST00000219343 6251 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
SYNE1Q8NF91 PARP4P2-201ENST00000446672 3326 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RPS7P12-201ENST00000422385 582 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CYP4F32P-201ENST00000426492 504 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC073909.1-201ENST00000447112 999 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC084337.1-201ENST00000524809 686 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RNA5SP394-201ENST00000364216 119 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 FIGN-202ENST00000409634 746 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 RN7SKP296-201ENST00000411185 341 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 KHDC1P1-201ENST00000511053 508 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC005277.2-201ENST00000617898 390 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AL357562.1-201ENST00000624911 609 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 SNORA43.1-201ENST00000364863 140 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF619P1-201ENST00000446539 752 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AP001823.1-201ENST00000604056 1003 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MIR193BHG-214ENST00000641765 509 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC130360.2-201ENST00000533477 1556 ntBASIC1.89□□□□□ -2.11
SYNE1Q8NF91 AC232271.1-201ENST00000602455 2715 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms