Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
CUX1P39880 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
CUX1P39880 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
CUX1P39880 AC114786.1-201ENST00000512892 1415 ntBASIC9.9□□□□□ -0.82
CUX1P39880 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
CUX1P39880 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC9.9□□□□□ -0.82
CUX1P39880 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
CUX1P39880 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
CUX1P39880 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
CUX1P39880 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
CUX1P39880 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC9.9□□□□□ -0.82
CUX1P39880 AL645927.1-201ENST00000396783 406 ntBASIC9.9□□□□□ -0.82
CUX1P39880 AC005297.1-201ENST00000444765 862 ntBASIC9.9□□□□□ -0.82
CUX1P39880 EEF1B2P5-201ENST00000444820 548 ntBASIC9.9□□□□□ -0.82
CUX1P39880 AC073610.1-201ENST00000489971 396 ntBASIC9.9□□□□□ -0.82
CUX1P39880 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC9.9□□□□□ -0.82
CUX1P39880 AC253576.1-201ENST00000511645 1156 ntBASIC9.9□□□□□ -0.82
CUX1P39880 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC9.9□□□□□ -0.82
CUX1P39880 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC9.9□□□□□ -0.82
CUX1P39880 AL049872.1-201ENST00000556323 322 ntBASIC9.9□□□□□ -0.82
CUX1P39880 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC9.9□□□□□ -0.82
CUX1P39880 AC008115.4-201ENST00000619780 775 ntBASIC9.9□□□□□ -0.82
CUX1P39880 CASC19-264ENST00000641912 1184 ntBASIC9.9□□□□□ -0.82
CUX1P39880 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC9.9□□□□□ -0.82
CUX1P39880 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC9.9□□□□□ -0.83
CUX1P39880 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
CUX1P39880 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC9.89□□□□□ -0.83
CUX1P39880 ATM-215ENST00000530958 5718 ntTSL 2 BASIC9.89□□□□□ -0.83
CUX1P39880 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 EIF4A1P7-201ENST00000421800 1220 ntBASIC9.89□□□□□ -0.83
CUX1P39880 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC9.89□□□□□ -0.83
CUX1P39880 APPL2-203ENST00000546731 684 ntTSL 2 BASIC9.89□□□□□ -0.83
CUX1P39880 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC9.89□□□□□ -0.83
CUX1P39880 PPATP2-201ENST00000605635 508 ntBASIC9.89□□□□□ -0.83
CUX1P39880 AL512329.2-201ENST00000607350 548 ntBASIC9.89□□□□□ -0.83
CUX1P39880 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC9.89□□□□□ -0.83
CUX1P39880 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC9.89□□□□□ -0.83
CUX1P39880 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
CUX1P39880 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC9.89□□□□□ -0.83
CUX1P39880 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
CUX1P39880 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 GTF2IP4-201ENST00000453092 2054 ntBASIC9.88□□□□□ -0.83
CUX1P39880 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 AC115223.1-201ENST00000466377 870 ntBASIC9.88□□□□□ -0.83
CUX1P39880 AL355032.1-201ENST00000472981 438 ntBASIC9.88□□□□□ -0.83
CUX1P39880 BX284632.1-201ENST00000478218 541 ntBASIC9.88□□□□□ -0.83
CUX1P39880 RN7SL808P-201ENST00000496066 299 ntBASIC9.88□□□□□ -0.83
CUX1P39880 SUMO2P7-201ENST00000511179 285 ntBASIC9.88□□□□□ -0.83
CUX1P39880 AC021146.10-201ENST00000515628 706 ntBASIC9.88□□□□□ -0.83
CUX1P39880 AC139365.2-201ENST00000517972 253 ntBASIC9.88□□□□□ -0.83
CUX1P39880 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 KCTD9P4-201ENST00000526766 1166 ntBASIC9.88□□□□□ -0.83
CUX1P39880 DCN-210ENST00000547568 823 ntTSL 3 BASIC9.88□□□□□ -0.83
CUX1P39880 AC096996.1-201ENST00000563813 325 ntBASIC9.88□□□□□ -0.83
CUX1P39880 AC037198.3-201ENST00000616754 526 ntBASIC9.88□□□□□ -0.83
CUX1P39880 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 PARP4P1-201ENST00000435945 2337 ntBASIC9.88□□□□□ -0.83
CUX1P39880 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 AL592429.1-201ENST00000403909 1473 ntBASIC9.88□□□□□ -0.83
CUX1P39880 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC9.88□□□□□ -0.83
CUX1P39880 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 CASC19-248ENST00000641674 1356 ntBASIC9.88□□□□□ -0.83
CUX1P39880 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC9.88□□□□□ -0.83
CUX1P39880 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
CUX1P39880 TNPO1P2-201ENST00000426249 2665 ntBASIC9.87□□□□□ -0.83
CUX1P39880 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 RNU1-24P-201ENST00000364285 165 ntBASIC9.87□□□□□ -0.83
CUX1P39880 RNA5SP30-201ENST00000365552 115 ntBASIC9.87□□□□□ -0.83
CUX1P39880 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 AL450023.1-201ENST00000450868 751 ntBASIC9.87□□□□□ -0.83
CUX1P39880 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC9.87□□□□□ -0.83
CUX1P39880 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC9.87□□□□□ -0.83
CUX1P39880 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
CUX1P39880 AL390726.5-202ENST00000564800 256 ntBASIC9.87□□□□□ -0.83
CUX1P39880 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC9.87□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms