Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TCEAL4P1-201ENST00000453620 588 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 RPLP0P1-201ENST00000457002 361 ntBASIC6.38□□□□□ -1.39
MSX2P35548 RBMY2HP-201ENST00000457961 720 ntBASIC6.38□□□□□ -1.39
MSX2P35548 WBP1LP1-201ENST00000460451 896 ntBASIC6.38□□□□□ -1.39
MSX2P35548 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 LEMD1-208ENST00000495594 637 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 PPM1AP1-201ENST00000502740 1135 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC008427.1-201ENST00000503102 655 ntBASIC6.38□□□□□ -1.39
MSX2P35548 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 ASNSP4-201ENST00000511103 447 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC091163.3-201ENST00000518269 1144 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC010476.1-201ENST00000519111 851 ntBASIC6.38□□□□□ -1.39
MSX2P35548 MRPS36P3-201ENST00000519284 130 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 PTS-202ENST00000524931 696 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 AC027020.1-202ENST00000557839 429 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX2P35548 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 AC119751.7-201ENST00000600494 245 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AL353807.4-201ENST00000604995 257 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AL139344.1-201ENST00000605228 195 ntBASIC6.38□□□□□ -1.39
MSX2P35548 OR7A19P-201ENST00000608051 733 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC021851.1-201ENST00000608537 1082 ntBASIC6.38□□□□□ -1.39
MSX2P35548 AC004836.1-201ENST00000623032 634 ntBASIC6.38□□□□□ -1.39
MSX2P35548 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 MIR3974-201ENST00000637126 96 ntBASIC6.38□□□□□ -1.39
MSX2P35548 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
MSX2P35548 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.38□□□□□ -1.39
MSX2P35548 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 ATP5BP1-201ENST00000411980 1574 ntBASIC6.38□□□□□ -1.39
MSX2P35548 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
MSX2P35548 MTRF1-203ENST00000379480 2185 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX2P35548 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
MSX2P35548 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 MTCO1P25-201ENST00000414449 1799 ntBASIC6.37□□□□□ -1.39
MSX2P35548 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 Z98755.1-201ENST00000407015 1384 ntBASIC6.37□□□□□ -1.39
MSX2P35548 MTND4P4-201ENST00000439033 1366 ntBASIC6.37□□□□□ -1.39
MSX2P35548 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.37□□□□□ -1.39
MSX2P35548 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 FAM32BP-201ENST00000344033 333 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RNA5SP427-201ENST00000365323 119 ntBASIC6.37□□□□□ -1.39
MSX2P35548 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 SNORA70H-201ENST00000383910 135 ntBASIC6.37□□□□□ -1.39
MSX2P35548 SNORA70J-201ENST00000384182 135 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RNU6-906P-201ENST00000384700 70 ntBASIC6.37□□□□□ -1.39
MSX2P35548 MIR128-2-201ENST00000384893 84 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RPL7-203ENST00000396466 762 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 SLC20A1P1-201ENST00000413906 956 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 AL157698.1-201ENST00000415190 1011 ntBASIC6.37□□□□□ -1.39
MSX2P35548 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC6.37□□□□□ -1.39
MSX2P35548 AC007568.1-201ENST00000422912 471 ntBASIC6.37□□□□□ -1.39
MSX2P35548 MED15P9-201ENST00000424716 533 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AL645936.2-201ENST00000430565 928 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AL021707.2-201ENST00000431924 786 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 NDUFA5P10-201ENST00000432147 357 ntBASIC6.37□□□□□ -1.39
MSX2P35548 GAPDHP75-201ENST00000433910 943 ntBASIC6.37□□□□□ -1.39
MSX2P35548 ST13P2-201ENST00000438916 1109 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 OR2L9P-201ENST00000444456 913 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC6.37□□□□□ -1.39
MSX2P35548 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RPL34P22-201ENST00000468193 318 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RN7SL314P-201ENST00000490735 292 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms