Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDHB3Q9Y5E6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDHB3Q9Y5E6 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 RPPH1-201ENST00000516869 333 ntBASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PCDHB3Q9Y5E6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC087289.5-201ENST00000586076 3175 ntBASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHB3Q9Y5E6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHB3Q9Y5E6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHB3Q9Y5E6 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHB3Q9Y5E6 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHB3Q9Y5E6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHB3Q9Y5E6 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHB3Q9Y5E6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms