Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sh3rf1Q69ZI1 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sh3rf1Q69ZI1 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sh3rf1Q69ZI1 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Mir5122-201ENSMUST00000175004 89 ntBASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sh3rf1Q69ZI1 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Gm5417-201ENSMUST00000079706 384 ntBASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sh3rf1Q69ZI1 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sh3rf1Q69ZI1 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms