Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 RNA5SP46-201ENST00000362370 120 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 SNORA43.1-201ENST00000364863 140 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AL133270.1-201ENST00000402635 279 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AP000534.2-201ENST00000412729 568 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 RPL36AP39-201ENST00000445859 318 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AC024940.4-201ENST00000605507 246 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AL132640.3-201ENST00000630473 177 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AC092821.3-202ENST00000641304 2767 ntBASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AC024651.2-201ENST00000562480 2098 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 CR383656.5-201ENST00000547616 1340 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AC024587.1-201ENST00000505925 2157 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 MIR640-201ENST00000385086 96 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 BX323845.3-201ENST00000428215 527 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 ZNF619P1-201ENST00000446539 752 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 FTLP8-201ENST00000446770 267 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AC096708.4-201ENST00000620563 552 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 AC027088.4-201ENST00000611559 1947 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 UGT2B27P-201ENST00000505092 1620 ntBASIC11.67□□□□□ -0.54
SHROOM4Q9ULL8 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AP002364.1-201ENST00000623330 3386 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC013488.1-201ENST00000526618 1838 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 TRGV5P-201ENST00000419915 354 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC006455.6-201ENST00000426192 893 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC127526.2-201ENST00000426436 775 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 GAPDHP23-201ENST00000444823 993 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC108693.1-201ENST00000496068 432 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 CYCSP22-201ENST00000517555 339 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 OR4A46P-201ENST00000527255 933 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC005244.1-201ENST00000582566 339 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AL034374.2-201ENST00000605281 548 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 AC024255.1-201ENST00000614376 102 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 OR8G3P-202ENST00000641572 1255 ntBASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
SHROOM4Q9ULL8 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 CCNT2P1-201ENST00000423082 1315 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 GAS5-202ENST00000414075 413 ntTSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC002504.1-201ENST00000438281 691 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 RPSAP41-201ENST00000439695 860 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 NENFP3-201ENST00000503735 313 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 CDH12P4-201ENST00000517835 295 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 CDH12P3-201ENST00000517935 295 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 CDH12P1-201ENST00000518435 295 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 RNU4ATAC-201ENST00000580972 127 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AL035661.1-201ENST00000620459 1144 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC068870.2-201ENST00000620635 389 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC022905.1-201ENST00000503430 3048 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 NCOA4P3-201ENST00000513203 1877 ntBASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
SHROOM4Q9ULL8 AC123769.2-201ENST00000624332 5984 ntBASIC11.65□□□□□ -0.55
SHROOM4Q9ULL8 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
SHROOM4Q9ULL8 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms