Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
FOXA3P55318 RPL11P3-201ENST00000395256 523 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 AL662791.3-201ENST00000413771 776 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 BX119904.3-201ENST00000428194 957 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 ATP6V1G1P4-201ENST00000438388 335 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC073072.2-201ENST00000447425 348 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 AC022080.2-201ENST00000452932 533 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 FRG2FP-204ENST00000453982 852 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 RN7SL836P-201ENST00000476140 296 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 RN7SL314P-201ENST00000490735 292 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 NPM1P28-201ENST00000492269 840 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 RN7SL776P-201ENST00000493390 268 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC105420.1-201ENST00000504389 582 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC093878.1-201ENST00000515630 432 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC078899.1-201ENST00000521432 1185 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 BMS1P16-201ENST00000556075 1147 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 LINC02284-201ENST00000558120 573 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 AC007346.2-201ENST00000564816 892 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC090826.1-203ENST00000569235 490 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 RNU4ATAC-201ENST00000580972 127 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC004805.3-201ENST00000603178 310 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA3P55318 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 ATM-229ENST00000639953 587 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 OR7A1P-202ENST00000641542 1158 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
FOXA3P55318 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 EEF1A1P28-201ENST00000450915 1403 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 AC126474.2-201ENST00000623268 1750 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 RPS2P45-201ENST00000469997 2057 ntBASIC4.52□□□□□ -1.69
FOXA3P55318 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA3P55318 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
FOXA3P55318 THAP12P9-201ENST00000503971 2360 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 MTCO1P7-201ENST00000419523 1542 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 AL138847.1-201ENST00000258651 546 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 RNA5SP355-201ENST00000365317 135 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
FOXA3P55318 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 RN7SKP91-201ENST00000410852 288 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 CLIC4P3-201ENST00000422221 752 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 RPS21P1-201ENST00000434479 247 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 RPL5P25-201ENST00000441148 775 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 GAPDHP23-201ENST00000444823 993 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 PRELID1P3-201ENST00000450055 643 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 UCK2-205ENST00000469256 753 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA3P55318 CLDND1-205ENST00000502288 560 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA3P55318 CCDC11P1-201ENST00000503137 1162 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC008629.1-201ENST00000506486 812 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms