Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 EMC3-AS1-205ENST00000438698 534 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 KHDC1P1-201ENST00000511053 508 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AC093664.1-201ENST00000511779 289 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AL953862.2-201ENST00000603089 820 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AL157899.1-201ENST00000604110 936 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MIR6889-201ENST00000613185 59 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MIR6823-201ENST00000622118 61 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AL121936.2-201ENST00000641935 662 ntBASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CHMP4AQ9BY43 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AP003486.1-201ENST00000525716 3994 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 CYCSP51-201ENST00000443545 318 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 POU5F1P5-201ENST00000445059 658 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 YRDCP3-201ENST00000456507 480 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 RN7SL643P-201ENST00000471845 291 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AL117692.1-201ENST00000494283 713 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC106800.3-201ENST00000511389 308 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 TBCA-209ENST00000522370 435 ntTSL 3 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC008055.1-201ENST00000547032 609 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC063977.7-201ENST00000594454 337 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC097467.4-201ENST00000605504 141 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC009779.8-202ENST00000607990 932 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AL132640.3-201ENST00000630473 177 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 AL353743.3-201ENST00000442109 1468 ntBASIC8.32□□□□□ -1.08
CHMP4AQ9BY43 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 CAP1P2-201ENST00000417455 1409 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 DMD-205ENST00000359836 7339 ntTSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 GAPDHP15-201ENST00000398586 975 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AL139805.1-201ENST00000407837 289 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 RPL36P18-201ENST00000419316 318 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 LINC00328-2P-201ENST00000436585 219 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 TIMM8BP2-201ENST00000445940 251 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 MTND4LP12-201ENST00000448237 295 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 OR7L1P-201ENST00000456181 380 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 CCNHP1-201ENST00000513311 678 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 IGHVIII-47-1-201ENST00000518187 331 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AL133399.1-201ENST00000527476 298 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC012368.3-201ENST00000604190 219 ntBASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC8.31□□□□□ -1.08
CHMP4AQ9BY43 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms