Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC106822.1-201ENST00000502647 526 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC106872.4-201ENST00000510050 523 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 OXR1-212ENST00000521592 993 ntTSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 NXPE2P1-201ENST00000543705 726 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 NPM1P5-201ENST00000557228 838 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 RPL7AP69-201ENST00000595306 806 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL137000.1-201ENST00000610528 1244 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC012676.3-201ENST00000614983 479 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC068213.1-201ENST00000625124 226 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 CFTRP2-201ENST00000634304 199 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MAPK10-350ENST00000641777 965 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC005618.1-201ENST00000606901 3148 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 GTF2IP4-201ENST00000453092 2054 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MTCO1P22-201ENST00000604619 1360 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC026310.1-201ENST00000396004 378 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 RNA5SP431-201ENST00000410312 120 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 RNA5SP280-201ENST00000411230 115 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 DPPA2P2-201ENST00000418220 897 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC006455.6-201ENST00000426192 893 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC245452.2-201ENST00000435222 392 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL451136.1-201ENST00000435399 325 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 XKRYP6-201ENST00000440468 1116 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 XKRYP3-201ENST00000442113 1116 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 NDUFA5P8-201ENST00000449019 346 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 MTCYBP14-201ENST00000457471 715 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC083806.1-201ENST00000468934 316 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 RN7SL382P-201ENST00000482631 282 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 PPP1R11P1-201ENST00000486095 376 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 RNA5SP518-201ENST00000515957 119 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 KCTD9P4-201ENST00000526766 1166 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC006512.2-201ENST00000543250 486 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL049874.4-201ENST00000557593 255 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC018558.5-201ENST00000565840 952 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 EIF4A3P1-201ENST00000578499 647 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC074141.1-201ENST00000588129 2995 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC100814.1-201ENST00000606963 623 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL021368.1-201ENST00000607490 540 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL118508.4-201ENST00000624142 1176 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC111152.1-202ENST00000635848 339 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 MTCO1P25-201ENST00000414449 1799 ntBASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PDLIM3Q53GG5 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PDLIM3Q53GG5 RARSP1-201ENST00000542842 1418 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms