Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AL121985.3-201ENST00000620690 523 ntBASIC5.7□□□□□ -1.5
SCN1BQ07699 AC015660.5-201ENST00000623238 564 ntBASIC5.7□□□□□ -1.5
SCN1BQ07699 AL132640.3-201ENST00000630473 177 ntBASIC5.7□□□□□ -1.5
SCN1BQ07699 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.7□□□□□ -1.5
SCN1BQ07699 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.7□□□□□ -1.5
SCN1BQ07699 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.7□□□□□ -1.5
SCN1BQ07699 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
SCN1BQ07699 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.7□□□□□ -1.5
SCN1BQ07699 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SCN1BQ07699 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 GMFG-201ENST00000253054 616 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SCN1BQ07699 RNA5SP176-201ENST00000390956 110 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AL607077.1-201ENST00000401718 499 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AL451061.1-201ENST00000407887 862 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 TRIM60P17-201ENST00000415181 719 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC009506.2-201ENST00000420635 840 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 OR52S1P-201ENST00000427016 937 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC027124.1-201ENST00000440852 466 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 GAPDHP20-201ENST00000444107 1007 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 RPL23AP28-201ENST00000448062 470 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC5.69□□□□□ -1.5
SCN1BQ07699 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AL022319.1-201ENST00000458183 1167 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 RN7SL492P-201ENST00000460700 295 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 RN7SL390P-201ENST00000470634 284 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 RPS16P9-201ENST00000477220 427 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 RPL7AP30-201ENST00000482859 796 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 IGHVII-49-1-201ENST00000521760 224 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 AP000619.2-201ENST00000546014 969 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC069240.2-201ENST00000550242 609 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC009268.1-201ENST00000561352 1203 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 MRPL45P2-203ENST00000573318 473 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AL353807.4-201ENST00000604995 257 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC012213.4-201ENST00000606457 354 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AL121782.1-201ENST00000611242 413 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 MIR6829-201ENST00000620375 67 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AC007347.2-201ENST00000623044 180 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 DLST-216ENST00000626051 252 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AL355488.2-201ENST00000609909 2850 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SCN1BQ07699 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.69□□□□□ -1.5
SCN1BQ07699 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 QRSL1P3-201ENST00000552666 1316 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 KYNUP3-201ENST00000574386 1341 ntBASIC5.69□□□□□ -1.5
SCN1BQ07699 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SCN1BQ07699 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SCN1BQ07699 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SCN1BQ07699 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SCN1BQ07699 AL356317.1-201ENST00000396110 1436 ntBASIC5.68□□□□□ -1.5
SCN1BQ07699 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SCN1BQ07699 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SCN1BQ07699 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
SCN1BQ07699 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.68□□□□□ -1.5
SCN1BQ07699 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SCN1BQ07699 RNU6-618P-201ENST00000363518 112 ntBASIC5.68□□□□□ -1.5
SCN1BQ07699 RNA5SP429-201ENST00000363688 109 ntBASIC5.68□□□□□ -1.5
SCN1BQ07699 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SCN1BQ07699 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SCN1BQ07699 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SCN1BQ07699 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.68□□□□□ -1.5
SCN1BQ07699 RNU2-22P-201ENST00000411266 212 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms