Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CDY11P-201ENST00000447168 1651 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MTCO1P11-201ENST00000429111 1528 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC125238.2-201ENST00000430003 1440 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CLCA3P-203ENST00000490028 2781 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 SNORD16-201ENST00000362803 99 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 RN7SKP81-201ENST00000365603 331 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AL157884.1-201ENST00000424561 454 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 RN7SL101P-201ENST00000496350 279 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MTATP6P1-201ENST00000514057 681 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MIR3614-201ENST00000581261 86 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MIR4443-201ENST00000585052 53 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 GLYATL1P2-202ENST00000588046 902 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC008555.7-201ENST00000605008 583 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC015849.6-201ENST00000605454 474 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 SNORA74.4-201ENST00000607595 199 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MTCO1P28-201ENST00000574177 1528 ntBASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HDDC3Q8N4P3 MAPK10-383ENST00000642032 3390 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL022323.4-201ENST00000623980 13120 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 HSPD1P9-201ENST00000420325 1636 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 BX284613.1-201ENST00000452221 1641 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL512422.1-201ENST00000407033 553 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL139415.1-201ENST00000424862 352 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL359839.1-201ENST00000451975 1160 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL139156.3-201ENST00000454802 394 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 RNU7-157P-201ENST00000459600 66 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 RN7SL174P-201ENST00000475578 289 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 RPS26P24-201ENST00000497656 331 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 LSM3P4-201ENST00000502948 309 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 SNX18P24-201ENST00000505249 671 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 TRIM77BP-201ENST00000524985 1119 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 CYCSP38-201ENST00000559840 322 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC008507.3-201ENST00000585753 472 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC109309.2-201ENST00000612597 332 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AC129778.1-202ENST00000623812 261 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL591379.1-207ENST00000635982 261 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 MROH3P-201ENST00000435735 2676 ntBASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms