Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SAMMSON-210ENST00000641260 1308 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 RNA5SP65-201ENST00000363166 119 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL157698.1-201ENST00000415190 1011 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 VDAC1P10-201ENST00000416715 891 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 SETP20-201ENST00000457046 852 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC091982.1-202ENST00000473923 343 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 MTND6P8-201ENST00000503471 522 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 MORF4L2P1-201ENST00000503761 858 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 KCTD9P6-201ENST00000522306 950 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC084121.1-201ENST00000533882 835 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC004232.1-201ENST00000571388 208 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC125494.2-201ENST00000602431 657 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC008536.1-201ENST00000602872 669 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL365181.4-201ENST00000609800 547 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 Six3os1_4.1-201ENST00000615706 324 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 U1.34-201ENST00000618578 162 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 MTCO1P1-201ENST00000624263 1081 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 TNPO1P2-201ENST00000426249 2665 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 AC011503.2-201ENST00000594230 1500 ntBASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
PDLIM3Q53GG5 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL929601.4-201ENST00000613011 1341 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MTCO1P11-201ENST00000429111 1528 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC053481.2-202ENST00000582394 1500 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 RNA5SP53-201ENST00000391299 120 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL359715.1-201ENST00000404330 555 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 PRUNEP1-201ENST00000425846 705 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 RPL34P27-201ENST00000428810 349 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC009518.3-201ENST00000438972 253 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL391987.1-201ENST00000441025 200 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MTND6P5-201ENST00000448266 512 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AL139156.3-201ENST00000454802 394 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 NMNAT1P3-201ENST00000457517 888 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 AC021006.1-201ENST00000489849 553 ntBASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
PDLIM3Q53GG5 H3F3AP3-201ENST00000497682 407 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms