Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IGLC4-201ENST00000517690 248 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 UBTFL10-201ENST00000528532 562 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 DPPA3P2-202ENST00000557188 1219 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AL365400.2-201ENST00000605604 902 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC106052.1-201ENST00000608029 497 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 MIR6883-201ENST00000614952 78 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC008115.4-201ENST00000619780 775 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC004232.3-201ENST00000622977 525 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC005753.1-201ENST00000623837 618 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC004777.1-201ENST00000624317 287 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CU459211.1-201ENST00000635667 749 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 AC022507.1-201ENST00000548349 1505 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CDY19P-201ENST00000411668 1613 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 CDY18P-201ENST00000438294 1609 ntBASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
TRIM39Q9HCM9 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 KARSP1-201ENST00000451871 1752 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 MTCO1P28-201ENST00000574177 1528 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC083806.2-201ENST00000617795 2685 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC005005.2-201ENST00000420779 380 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 PUDPP2-201ENST00000431423 643 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC245047.1-201ENST00000433276 873 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 LSM3P3-201ENST00000436601 306 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AL356133.1-201ENST00000444762 372 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AL034399.1-201ENST00000451535 380 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC112225.1-201ENST00000508230 297 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC021106.1-201ENST00000509020 1058 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC112673.1-201ENST00000513168 575 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC119751.5-201ENST00000514077 770 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 HAUS1P3-201ENST00000523909 662 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 RBMS2P1-201ENST00000525031 1226 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 OR10V3P-201ENST00000525712 725 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AP002004.1-206ENST00000532441 876 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC124891.1-201ENST00000536322 519 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC090888.2-201ENST00000559765 1144 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 ACTG1P15-201ENST00000570019 1063 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC011447.2-201ENST00000592921 283 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC012065.3-201ENST00000602736 439 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 VN1R9P-201ENST00000614184 867 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 RMST_10.1-201ENST00000616309 154 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 AC008626.2-201ENST00000624425 248 ntBASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
TRIM39Q9HCM9 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms