Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AC105148.1-201ENST00000604961 409 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AL513218.1-201ENST00000606527 391 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AC097641.3-201ENST00000613523 464 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AL445649.1-201ENST00000615941 691 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 MAPK10-287ENST00000641217 3037 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 CDY5P-201ENST00000411487 1580 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 CDY9P-201ENST00000451397 1580 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
SMARCA1P28370 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 MT-RNR1-201ENST00000389680 954 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 YWHAZP4-201ENST00000392459 708 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AL157702.1-201ENST00000398764 426 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AL359885.1-201ENST00000415786 903 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC7.37□□□□□ -1.23
SMARCA1P28370 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC013410.2-201ENST00000422627 201 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 VN1R20P-201ENST00000425215 966 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 CLNS1AP1-201ENST00000435954 682 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 GTF2IP14-201ENST00000441415 586 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 RN7SL369P-201ENST00000477138 299 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 RN7SL326P-201ENST00000477493 296 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 RN7SL362P-201ENST00000494228 267 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 RN7SL104P-201ENST00000498686 293 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 NPM1P27-201ENST00000502784 830 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC7.37□□□□□ -1.23
SMARCA1P28370 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.37□□□□□ -1.23
SMARCA1P28370 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC093524.1-201ENST00000564266 1094 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AC005632.2-201ENST00000564271 828 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC024933.1-201ENST00000608472 348 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AL008723.3-201ENST00000608926 449 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 OSTC-205ENST00000613215 876 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC104307.1-201ENST00000616142 196 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC7.37□□□□□ -1.23
SMARCA1P28370 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SMARCA1P28370 TMCC1P1-201ENST00000518897 1980 ntBASIC7.37□□□□□ -1.23
SMARCA1P28370 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.37□□□□□ -1.23
SMARCA1P28370 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC7.36□□□□□ -1.23
SMARCA1P28370 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.36□□□□□ -1.23
SMARCA1P28370 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
SMARCA1P28370 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.36□□□□□ -1.23
SMARCA1P28370 AL359195.2-201ENST00000623657 4412 ntBASIC7.36□□□□□ -1.23
SMARCA1P28370 AL049634.1-201ENST00000453770 1720 ntBASIC7.36□□□□□ -1.23
SMARCA1P28370 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC7.36□□□□□ -1.23
SMARCA1P28370 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC7.36□□□□□ -1.23
SMARCA1P28370 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SMARCA1P28370 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms