Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL121890.2-201ENST00000617644 465 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 AC117503.3-201ENST00000623811 601 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 AC009120.2-204ENST00000621548 2032 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 AC022306.1-201ENST00000560489 1562 ntBASIC7.96□□□□□ -1.14
HMGB1P09429 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC7.96□□□□□ -1.14
HMGB1P09429 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC7.96□□□□□ -1.14
HMGB1P09429 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC7.96□□□□□ -1.14
HMGB1P09429 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
HMGB1P09429 AC010329.1-201ENST00000593903 8328 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC7.95□□□□□ -1.14
HMGB1P09429 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 CREM-216ENST00000429130 1476 ntTSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 AL136531.3-201ENST00000624378 3658 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC7.95□□□□□ -1.14
HMGB1P09429 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.95□□□□□ -1.14
HMGB1P09429 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
HMGB1P09429 RNA5SP152-201ENST00000365184 110 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 CYP2AC1P-201ENST00000407830 1173 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AL451061.1-201ENST00000407887 862 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 RN7SKP91-201ENST00000410852 288 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC7.95□□□□□ -1.14
HMGB1P09429 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.95□□□□□ -1.14
HMGB1P09429 RPS7P12-201ENST00000422385 582 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 MTND4LP7-201ENST00000431728 294 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 CASP3P1-201ENST00000446037 609 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 RPL7AP23-201ENST00000482625 776 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC7.95□□□□□ -1.14
HMGB1P09429 AL109628.1-201ENST00000556877 366 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 AL512413.1-201ENST00000606489 382 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AC025171.4-201ENST00000607250 1047 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 TP53TG1_2.1-201ENST00000611226 182 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 AC005393.1-201ENST00000617916 584 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC7.95□□□□□ -1.14
HMGB1P09429 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
HMGB1P09429 AC083837.1-201ENST00000565297 2994 ntBASIC7.95□□□□□ -1.14
HMGB1P09429 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
HMGB1P09429 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.14
HMGB1P09429 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.95□□□□□ -1.14
HMGB1P09429 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.94□□□□□ -1.14
HMGB1P09429 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC7.94□□□□□ -1.14
HMGB1P09429 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 AC017002.4-201ENST00000604721 1525 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.14
HMGB1P09429 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.94□□□□□ -1.14
HMGB1P09429 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC7.94□□□□□ -1.14
HMGB1P09429 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 RN7SKP130-201ENST00000364924 301 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC7.94□□□□□ -1.14
HMGB1P09429 ADIG-201ENST00000373348 430 ntTSL 2 BASIC7.94□□□□□ -1.14
HMGB1P09429 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.94□□□□□ -1.14
HMGB1P09429 AL049697.3-201ENST00000406493 982 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 RN7SKP188-201ENST00000410789 317 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 RN7SKP296-201ENST00000411185 341 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC7.94□□□□□ -1.14
HMGB1P09429 FAM204CP-201ENST00000424489 642 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 MTND1P10-201ENST00000426108 832 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 GAPDHP34-201ENST00000432112 823 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC7.94□□□□□ -1.14
HMGB1P09429 GAPDHP20-201ENST00000444107 1007 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 AL845321.1-201ENST00000444603 348 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC7.94□□□□□ -1.14
HMGB1P09429 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC7.94□□□□□ -1.14
HMGB1P09429 SSR3-208ENST00000496050 579 ntTSL 4 BASIC7.94□□□□□ -1.14
HMGB1P09429 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC7.94□□□□□ -1.14
HMGB1P09429 AC083906.1-201ENST00000509298 406 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 AC091849.1-201ENST00000509920 121 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 RNU6-1308P-201ENST00000516817 103 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 AC073581.1-201ENST00000519036 575 ntBASIC7.94□□□□□ -1.14
HMGB1P09429 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms