Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 AC112243.1-201ENST00000623949 3851 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 AL355377.1-201ENST00000621125 1653 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 AC018765.1-201ENST00000623357 3446 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 AC011416.1-201ENST00000514947 1732 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.14□□□□□ -1.43
HOXC4P09017 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 RNA5SP110-201ENST00000362638 115 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 AC004386.1-201ENST00000393214 761 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 AL445238.1-204ENST00000400311 463 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 RPL7P58-201ENST00000402913 758 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXC4P09017 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 TRIM60P16-201ENST00000444048 694 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 OR13K1P-201ENST00000444577 975 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC4P09017 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXC4P09017 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXC4P09017 RPA2P3-201ENST00000533268 770 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 AC090115.2-201ENST00000548060 883 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXC4P09017 AL136097.3-201ENST00000611097 505 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 AC024884.1-201ENST00000620583 399 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 LYARP1-201ENST00000436977 1501 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HOXC4P09017 AC089998.1-201ENST00000548575 3141 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC4P09017 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC4P09017 DOCK11P1-201ENST00000553480 5932 ntBASIC6.14□□□□□ -1.43
HOXC4P09017 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC4P09017 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
HOXC4P09017 AC023632.6-201ENST00000624338 2177 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 OR11H13P-201ENST00000359695 979 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 SNORA77.2-201ENST00000408571 112 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 RN7SKP240-201ENST00000410583 375 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 HMGN1P2-201ENST00000445197 310 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AC023194.2-201ENST00000465398 406 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 CR383658.1-201ENST00000514609 734 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXC4P09017 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 CYCSP38-201ENST00000559840 322 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC4P09017 AC007346.1-201ENST00000569208 867 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC4P09017 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.13□□□□□ -1.43
HOXC4P09017 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.13□□□□□ -1.43
HOXC4P09017 AC108865.2-201ENST00000606881 432 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 RN7SL261P-201ENST00000613441 282 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 TCL6_3.1-201ENST00000619064 137 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXC4P09017 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXC4P09017 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.13□□□□□ -1.43
HOXC4P09017 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXC4P09017 PABPC1P8-201ENST00000452851 2086 ntBASIC6.13□□□□□ -1.43
HOXC4P09017 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms