Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC093155.2-201ENST00000420734 937 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 RPS27AP2-201ENST00000457576 465 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 NDUFB5P1-201ENST00000508134 564 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 SUMO2P7-201ENST00000511179 285 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 MIR3189-201ENST00000578735 73 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AC068870.2-201ENST00000620635 389 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 OR2M1P-201ENST00000318104 951 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RN7SKP124-201ENST00000364730 341 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 PPIAP10-201ENST00000438675 458 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 Y_RNA.710-201ENST00000516975 110 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 COX6CP7-201ENST00000597056 208 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AL008723.3-201ENST00000608926 449 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC079395.2-201ENST00000610982 737 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AL132640.3-201ENST00000630473 177 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RBPJP7-201ENST00000442803 1447 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RBPJP5-201ENST00000449433 1447 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC073429.2-201ENST00000569694 1444 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RNU1-19P-201ENST00000363306 165 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 SPTLC1P2-201ENST00000407089 121 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 RN7SL826P-201ENST00000479724 288 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC021269.1-201ENST00000526860 705 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 AC027229.1-201ENST00000583887 253 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 MIR6793-201ENST00000612376 63 ntBASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC88AQ3V6T2 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 RN7SKP115-201ENST00000363177 317 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AL050335.1-201ENST00000396909 869 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AL391422.1-201ENST00000402155 436 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 RPL35AP3-201ENST00000414680 288 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 RPA2P3-201ENST00000533268 770 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AP005119.1-201ENST00000580956 292 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AL035661.1-201ENST00000620459 1144 ntBASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.59□□□□□ -1.19
CCDC88AQ3V6T2 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC88AQ3V6T2 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.59□□□□□ -1.2
CCDC88AQ3V6T2 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC88AQ3V6T2 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
CCDC88AQ3V6T2 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
CCDC88AQ3V6T2 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CCDC88AQ3V6T2 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms