Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RN7SL826P-201ENST00000479724 288 ntBASIC10.13□□□□□ -0.79
CUX1P39880 RN7SL57P-201ENST00000493687 290 ntBASIC10.13□□□□□ -0.79
CUX1P39880 AC008629.2-201ENST00000503783 483 ntBASIC10.13□□□□□ -0.79
CUX1P39880 SNORA26.10-201ENST00000516427 141 ntBASIC10.13□□□□□ -0.79
CUX1P39880 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC10.13□□□□□ -0.79
CUX1P39880 AC087269.2-201ENST00000641764 975 ntBASIC10.13□□□□□ -0.79
CUX1P39880 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 AC110716.2-201ENST00000563865 3945 ntBASIC10.13□□□□□ -0.79
CUX1P39880 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC10.13□□□□□ -0.79
CUX1P39880 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC10.13□□□□□ -0.79
CUX1P39880 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
CUX1P39880 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC10.13□□□□□ -0.79
CUX1P39880 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
CUX1P39880 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
CUX1P39880 SPTLC1P2-201ENST00000407089 121 ntBASIC10.12□□□□□ -0.79
CUX1P39880 NANOGP4-201ENST00000427230 913 ntBASIC10.12□□□□□ -0.79
CUX1P39880 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 AC012075.1-201ENST00000436549 580 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC007386.1-201ENST00000455212 582 ntBASIC10.12□□□□□ -0.79
CUX1P39880 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 AC073594.1-201ENST00000462065 364 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC10.12□□□□□ -0.79
CUX1P39880 RNA5SP400-201ENST00000517155 111 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC10.12□□□□□ -0.79
CUX1P39880 AC119403.2-201ENST00000590960 598 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC008536.1-201ENST00000602872 669 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC087565.3-203ENST00000641018 837 ntBASIC10.12□□□□□ -0.79
CUX1P39880 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC10.12□□□□□ -0.79
CUX1P39880 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 AC092692.1-201ENST00000623625 2595 ntBASIC10.12□□□□□ -0.79
CUX1P39880 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
CUX1P39880 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 MRPL53P1-201ENST00000414323 319 ntBASIC10.12□□□□□ -0.79
CUX1P39880 NME1P1-201ENST00000420914 382 ntBASIC10.12□□□□□ -0.79
CUX1P39880 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC10.12□□□□□ -0.79
CUX1P39880 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 AC008953.1-201ENST00000497334 318 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC10.12□□□□□ -0.79
CUX1P39880 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC10.12□□□□□ -0.79
CUX1P39880 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC10.12□□□□□ -0.79
CUX1P39880 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC10.12□□□□□ -0.79
CUX1P39880 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 AC024940.4-201ENST00000605507 246 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 AF117829.2-201ENST00000619538 361 ntBASIC10.12□□□□□ -0.79
CUX1P39880 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC10.12□□□□□ -0.79
CUX1P39880 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CUX1P39880 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 C4BPAP1-201ENST00000415474 1893 ntBASIC10.11□□□□□ -0.79
CUX1P39880 AC061975.7-201ENST00000592016 2692 ntBASIC10.11□□□□□ -0.79
CUX1P39880 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 AL049634.1-201ENST00000453770 1720 ntBASIC10.11□□□□□ -0.79
CUX1P39880 FIGN-202ENST00000409634 746 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 CFL1P1-202ENST00000432948 411 ntBASIC10.11□□□□□ -0.79
CUX1P39880 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC10.11□□□□□ -0.79
CUX1P39880 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC10.11□□□□□ -0.79
CUX1P39880 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 AP005639.1-201ENST00000526939 192 ntBASIC10.11□□□□□ -0.79
CUX1P39880 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC10.11□□□□□ -0.79
CUX1P39880 AL691477.1-201ENST00000624398 162 ntBASIC10.11□□□□□ -0.79
CUX1P39880 AC022726.2-201ENST00000634673 547 ntBASIC10.11□□□□□ -0.79
CUX1P39880 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CUX1P39880 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX1P39880 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX1P39880 AC013488.1-201ENST00000526618 1838 ntBASIC10.1□□□□□ -0.79
CUX1P39880 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
CUX1P39880 ITPK1-AS1-201ENST00000553639 4701 ntBASIC10.1□□□□□ -0.79
CUX1P39880 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC10.1□□□□□ -0.79
CUX1P39880 MAPK10-323ENST00000641493 3207 ntBASIC10.1□□□□□ -0.79
CUX1P39880 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC10.1□□□□□ -0.79
CUX1P39880 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC10.1□□□□□ -0.79
CUX1P39880 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CUX1P39880 RNA5SP478-201ENST00000364657 115 ntBASIC10.1□□□□□ -0.79
CUX1P39880 SNRPEP6-201ENST00000407465 277 ntBASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms