Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL8A1P27658 LINC01915-201ENST00000577994 2321 ntTSL 2 BASIC7.16□□□□□ -1.26
COL8A1P27658 AL359924.1-201ENST00000450451 3127 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL8A1P27658 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL8A1P27658 ATP6V0D2-201ENST00000285393 2446 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL8A1P27658 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC7.16□□□□□ -1.26
COL8A1P27658 ZSCAN9-207ENST00000531979 1601 ntAPPRIS P3 TSL 2 BASIC7.16□□□□□ -1.26
COL8A1P27658 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL8A1P27658 AMPH-202ENST00000356264 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 CUBNP1-201ENST00000412710 1790 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 NXPE3-207ENST00000616286 1832 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 KATNAL2-201ENST00000245121 2833 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 TBX5-201ENST00000310346 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 LINC01347-202ENST00000627498 3841 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 SERPINB2-201ENST00000299502 1913 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 DCN-220ENST00000552962 1930 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL137918.1-201ENST00000624542 1922 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 FAH-204ENST00000539156 3427 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 CRTAM-201ENST00000227348 2469 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 AL078621.1-201ENST00000272567 768 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 Y_RNA.419-201ENST00000384041 102 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 RNU6-1160P-201ENST00000384546 104 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 SNORA57.2-201ENST00000391265 128 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 SNORA75.4-201ENST00000391278 119 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL161787.1-201ENST00000401543 174 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC068533.2-201ENST00000411872 306 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC004830.1-201ENST00000420449 285 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 VDAC2P3-201ENST00000430995 828 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 MTCO1P45-201ENST00000431457 267 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 HMGB1P5-202ENST00000451497 985 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AL109809.3-201ENST00000456875 246 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 TUBBP11-201ENST00000472255 252 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 HMGB1P44-201ENST00000508597 572 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 MEPE-206ENST00000511670 550 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC026700.1-201ENST00000512074 544 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC091096.1-201ENST00000521955 614 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC087521.3-201ENST00000528226 553 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC005000.1-201ENST00000536192 288 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC093027.1-201ENST00000546698 429 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC133485.3-201ENST00000562604 262 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC138907.3-201ENST00000563937 262 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL163952.1-202ENST00000569625 600 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC138869.2-201ENST00000569850 262 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC7.15□□□□□ -1.26
COL8A1P27658 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AC073534.1-201ENST00000598671 1056 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL392112.1-201ENST00000605115 829 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC098614.4-201ENST00000607601 462 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC110769.3-201ENST00000624567 1173 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 PCBP1-AS1-322ENST00000628147 553 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC7.15□□□□□ -1.26
COL8A1P27658 AL121936.2-201ENST00000641935 662 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 AC099063.3-201ENST00000642066 185 ntBASIC7.15□□□□□ -1.26
COL8A1P27658 GNA12-203ENST00000407904 3918 ntTSL 2 BASIC7.15□□□□□ -1.26
COL8A1P27658 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL8A1P27658 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC7.15□□□□□ -1.27
COL8A1P27658 PHACTR2P1-201ENST00000605639 1414 ntBASIC7.15□□□□□ -1.27
COL8A1P27658 FRMD6-201ENST00000344768 2972 ntTSL 2 BASIC7.15□□□□□ -1.27
COL8A1P27658 ZSCAN32-201ENST00000304926 3027 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 AC110769.2-201ENST00000602760 1548 ntBASIC7.15□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms