Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AL359694.2-201ENST00000567753 1615 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC078880.4-201ENST00000617627 1749 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 BRD7P1-201ENST00000557705 1915 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 MAPK10-383ENST00000642032 3390 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AL157702.1-201ENST00000398764 426 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 RN7SKP281-201ENST00000410472 352 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC010240.2-201ENST00000445363 1205 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC022415.1-202ENST00000486612 523 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC022206.1-201ENST00000495947 347 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 RNA5SP206-201ENST00000516703 121 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 IGHV3-57-201ENST00000520143 280 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 OR4A13P-201ENST00000529316 942 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 MIR5095-201ENST00000578844 88 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AL359704.2-201ENST00000604335 521 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 MRPL57P1-201ENST00000621486 265 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC073862.4-201ENST00000622982 854 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 FO082842.1-201ENST00000423552 1370 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC104162.1-201ENST00000430831 2382 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 AC061975.7-201ENST00000592016 2692 ntBASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
CCDC3Q9BQI4 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL133243.4-201ENST00000623116 3109 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC105114.1-201ENST00000624795 1862 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL589993.1-201ENST00000407450 2524 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 OR2M1P-201ENST00000318104 951 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC004386.1-201ENST00000393214 761 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC009500.1-201ENST00000420684 583 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 MED28P4-201ENST00000433137 572 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 RPL12P30-201ENST00000488389 499 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC063943.2-201ENST00000495697 534 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AC073046.2-201ENST00000604756 527 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AP001437.1-201ENST00000608783 456 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 AL449283.1-201ENST00000602631 3403 ntBASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC3Q9BQI4 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms