Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC010401.2-201ENST00000575137 4934 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 RPL11P4-201ENST00000332269 436 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 UBBP1-201ENST00000392399 473 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL035422.1-201ENST00000414193 397 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC066692.1-201ENST00000421721 457 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL354707.3-201ENST00000427308 331 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 BZW1P1-201ENST00000454901 1240 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC007386.1-201ENST00000455212 582 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 PSMA6P2-201ENST00000457574 686 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC135721.2-201ENST00000464237 300 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC093870.1-201ENST00000506837 213 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 MIR4700-201ENST00000578311 74 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC087468.1-201ENST00000604365 630 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AP001437.1-201ENST00000608783 456 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC022467.1-201ENST00000614738 749 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 MTCO1P1-201ENST00000624263 1081 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AC061999.1-201ENST00000624454 177 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 PSMC1P4-201ENST00000515236 1327 ntBASIC6.38□□□□□ -1.39
COL28A1Q2UY09 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL28A1Q2UY09 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AP002833.3-201ENST00000625075 2265 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL355377.1-201ENST00000621125 1653 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL451064.2-201ENST00000623514 1654 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AP000641.1-201ENST00000531988 1639 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RNF19BPY-201ENST00000458209 1550 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 MIR199B-201ENST00000384849 110 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RNA5SP178-201ENST00000410380 128 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RPSAP65-201ENST00000429660 595 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RPL23AP19-201ENST00000436229 369 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 TUBB4BP6-201ENST00000437576 479 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 SNRPBP1-201ENST00000443634 282 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 OR52I1-201ENST00000450052 1050 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 OR51A1P-201ENST00000511110 946 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC106800.2-201ENST00000514009 1103 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.37□□□□□ -1.39
COL28A1Q2UY09 RNA5SP278-201ENST00000517055 102 ntBASIC6.37□□□□□ -1.39
COL28A1Q2UY09 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms