Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNX18P9-201ENST00000440580 835 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 GAPDHP33-201ENST00000443168 1013 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 BX276092.8-201ENST00000455722 250 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 NDUFB4P1-201ENST00000462398 381 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 RPL19P11-201ENST00000495944 589 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA3P55318 BCAS2P1-201ENST00000528022 632 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXA3P55318 AC084033.2-201ENST00000551532 967 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC4.65□□□□□ -1.67
FOXA3P55318 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA3P55318 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA3P55318 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA3P55318 AC010542.3-202ENST00000561728 701 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
FOXA3P55318 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.65□□□□□ -1.67
FOXA3P55318 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA3P55318 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXA3P55318 AL161931.1-201ENST00000612768 246 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 IGKV2OR2-10-201ENST00000613976 311 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 RN7SL820P-201ENST00000616437 299 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 AC241377.1-201ENST00000619797 406 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 MIR7854-201ENST00000620068 65 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 AC061999.1-201ENST00000624454 177 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC4.65□□□□□ -1.67
FOXA3P55318 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXA3P55318 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXA3P55318 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
FOXA3P55318 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA3P55318 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA3P55318 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 AC120036.2-201ENST00000509729 1474 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
FOXA3P55318 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
FOXA3P55318 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 RN7SKP128-201ENST00000364270 303 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 U3.23-201ENST00000391132 200 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 AL158827.1-201ENST00000416300 391 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC110995.1-202ENST00000422914 860 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 AL121917.1-202ENST00000424434 367 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 ETF1P1-206ENST00000427296 984 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC112187.1-201ENST00000455837 479 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 OR9A1P-202ENST00000484361 945 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 TRBV5-2-201ENST00000489095 273 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA3P55318 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 REG4-204ENST00000530654 612 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 SETP17-201ENST00000534163 817 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC007068.2-201ENST00000543168 395 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 AC244502.2-201ENST00000543361 851 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA3P55318 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC016839.1-201ENST00000578162 867 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 MIR132-201ENST00000591554 101 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 DIMT1P1-201ENST00000603970 763 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 HNRNPA3P9-201ENST00000604913 979 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 AC019257.2-201ENST00000605539 497 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA3P55318 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC006924.1-201ENST00000610750 559 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 AL353684.1-201ENST00000622677 1120 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXA3P55318 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AC140479.4-205ENST00000636339 820 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXA3P55318 AL132656.3-201ENST00000606384 1595 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 PSMC1P4-201ENST00000515236 1327 ntBASIC4.64□□□□□ -1.67
FOXA3P55318 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXA3P55318 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXA3P55318 AL158152.1-201ENST00000602652 1435 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms