Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 RNU1-46P-201ENST00000384425 164 ntBASIC6□□□□□ -1.45
SOX3P41225 YWHAZP4-201ENST00000392459 708 ntBASIC6□□□□□ -1.45
SOX3P41225 PRELID1P1-201ENST00000403549 660 ntBASIC6□□□□□ -1.45
SOX3P41225 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 AL360013.1-201ENST00000419031 858 ntBASIC6□□□□□ -1.45
SOX3P41225 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6□□□□□ -1.45
SOX3P41225 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 AC083862.1-201ENST00000427378 1242 ntBASIC6□□□□□ -1.45
SOX3P41225 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6□□□□□ -1.45
SOX3P41225 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6□□□□□ -1.45
SOX3P41225 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 COX4I1P2-201ENST00000447446 547 ntBASIC6□□□□□ -1.45
SOX3P41225 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6□□□□□ -1.45
SOX3P41225 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 RARRES2P3-201ENST00000457739 473 ntBASIC6□□□□□ -1.45
SOX3P41225 RN7SL741P-201ENST00000482473 289 ntBASIC6□□□□□ -1.45
SOX3P41225 AC092824.1-201ENST00000483524 576 ntBASIC6□□□□□ -1.45
SOX3P41225 AC117500.1-201ENST00000497352 755 ntBASIC6□□□□□ -1.45
SOX3P41225 AC131392.1-201ENST00000506490 633 ntBASIC6□□□□□ -1.45
SOX3P41225 AC083906.1-201ENST00000509298 406 ntBASIC6□□□□□ -1.45
SOX3P41225 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6□□□□□ -1.45
SOX3P41225 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6□□□□□ -1.45
SOX3P41225 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6□□□□□ -1.45
SOX3P41225 OR52K3P-201ENST00000531655 943 ntBASIC6□□□□□ -1.45
SOX3P41225 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6□□□□□ -1.45
SOX3P41225 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6□□□□□ -1.45
SOX3P41225 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 AC025171.4-201ENST00000607250 1047 ntBASIC6□□□□□ -1.45
SOX3P41225 AC005828.7-201ENST00000607331 556 ntBASIC6□□□□□ -1.45
SOX3P41225 AC009779.8-202ENST00000607990 932 ntBASIC6□□□□□ -1.45
SOX3P41225 uc_338.29-201ENST00000615099 168 ntBASIC6□□□□□ -1.45
SOX3P41225 5S_rRNA.29-201ENST00000641250 107 ntBASIC6□□□□□ -1.45
SOX3P41225 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6□□□□□ -1.45
SOX3P41225 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6□□□□□ -1.45
SOX3P41225 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6□□□□□ -1.45
SOX3P41225 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6□□□□□ -1.45
SOX3P41225 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SOX3P41225 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.99□□□□□ -1.45
SOX3P41225 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 PPBPP2-201ENST00000513150 1362 ntBASIC5.99□□□□□ -1.45
SOX3P41225 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
SOX3P41225 FUNDC2P3-201ENST00000334716 533 ntBASIC5.99□□□□□ -1.45
SOX3P41225 RN7SKP171-201ENST00000364417 303 ntBASIC5.99□□□□□ -1.45
SOX3P41225 RNA5SP77-201ENST00000365394 120 ntBASIC5.99□□□□□ -1.45
SOX3P41225 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.99□□□□□ -1.45
SOX3P41225 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 GTF3AP6-201ENST00000432585 986 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AC010086.1-201ENST00000437359 1052 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AC097359.1-201ENST00000447946 463 ntBASIC5.99□□□□□ -1.45
SOX3P41225 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 HMGB3P14-201ENST00000494195 599 ntBASIC5.99□□□□□ -1.45
SOX3P41225 NPM1P27-201ENST00000502784 830 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 AL133399.1-201ENST00000527476 298 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.99□□□□□ -1.45
SOX3P41225 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.99□□□□□ -1.45
SOX3P41225 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.99□□□□□ -1.45
SOX3P41225 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.99□□□□□ -1.45
SOX3P41225 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 AC121758.1-202ENST00000556917 658 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.99□□□□□ -1.45
SOX3P41225 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 MIR6085-201ENST00000618314 110 ntBASIC5.99□□□□□ -1.45
SOX3P41225 AP001264.1-201ENST00000620602 703 ntBASIC5.99□□□□□ -1.45
SOX3P41225 MRPL57P1-201ENST00000621486 265 ntBASIC5.99□□□□□ -1.45
SOX3P41225 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.99□□□□□ -1.45
SOX3P41225 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SOX3P41225 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.99□□□□□ -1.45
SOX3P41225 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SOX3P41225 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SOX3P41225 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.98□□□□□ -1.45
SOX3P41225 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms