Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNA5SP155-201ENST00000411154 129 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC5.32□□□□□ -1.56
SDCBPO00560 AL445687.2-201ENST00000458156 728 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 RN7SL267P-201ENST00000485107 261 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 RPL5P33-201ENST00000487833 905 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.32□□□□□ -1.56
SDCBPO00560 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.32□□□□□ -1.56
SDCBPO00560 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.32□□□□□ -1.56
SDCBPO00560 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.32□□□□□ -1.56
SDCBPO00560 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.32□□□□□ -1.56
SDCBPO00560 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SDCBPO00560 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.32□□□□□ -1.56
SDCBPO00560 OR4C49P-201ENST00000563891 900 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.32□□□□□ -1.56
SDCBPO00560 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.32□□□□□ -1.56
SDCBPO00560 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.32□□□□□ -1.56
SDCBPO00560 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC5.32□□□□□ -1.56
SDCBPO00560 RN7SL32P-201ENST00000580514 281 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.32□□□□□ -1.56
SDCBPO00560 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.32□□□□□ -1.56
SDCBPO00560 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.32□□□□□ -1.56
SDCBPO00560 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 AP002512.4-202ENST00000641599 4530 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDCBPO00560 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.32□□□□□ -1.56
SDCBPO00560 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.32□□□□□ -1.56
SDCBPO00560 AC027575.3-201ENST00000583058 2747 ntBASIC5.32□□□□□ -1.56
SDCBPO00560 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDCBPO00560 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC010894.1-201ENST00000313760 361 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDCBPO00560 RNU1-5P-201ENST00000362684 144 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 RN7SKP257-201ENST00000364525 309 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 GNG5P2-201ENST00000372054 207 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 MIR433-201ENST00000384837 93 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 RNU11-6P-201ENST00000391127 133 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AL391419.1-201ENST00000398901 1275 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 AL121835.1-201ENST00000404250 354 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 MORN2-202ENST00000409077 465 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 NPM1P9-201ENST00000453156 844 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 VPS25P1-201ENST00000455691 508 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC114728.1-201ENST00000488289 483 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC093870.1-201ENST00000506837 213 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 NREP-217ENST00000509025 987 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC103968.1-201ENST00000557841 573 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDCBPO00560 PPIAP14-201ENST00000577627 496 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 MIR3189-201ENST00000578735 73 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 SYPL1P2-201ENST00000582878 727 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.31□□□□□ -1.56
SDCBPO00560 RPL29P33-201ENST00000587474 316 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 AC114477.1-201ENST00000605097 605 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDCBPO00560 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.31□□□□□ -1.56
SDCBPO00560 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.31□□□□□ -1.56
SDCBPO00560 AP001541.1-201ENST00000623322 1904 ntBASIC5.31□□□□□ -1.56
SDCBPO00560 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.3□□□□□ -1.56
SDCBPO00560 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.3□□□□□ -1.56
SDCBPO00560 AC092692.1-201ENST00000623625 2595 ntBASIC5.3□□□□□ -1.56
SDCBPO00560 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDCBPO00560 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms