Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 AC093484.2-201ENST00000580996 2166 ntBASIC20.44■□□□□ 0.86
PCDH9Q9HC56 AC087289.5-201ENST00000586076 3175 ntBASIC20.44■□□□□ 0.86
PCDH9Q9HC56 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.44■□□□□ 0.86
PCDH9Q9HC56 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH9Q9HC56 KRT8P20-201ENST00000423953 1409 ntBASIC20.44■□□□□ 0.86
PCDH9Q9HC56 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDH9Q9HC56 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 AL355802.2-201ENST00000402069 882 ntBASIC20.42■□□□□ 0.86
PCDH9Q9HC56 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.42■□□□□ 0.86
PCDH9Q9HC56 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.42■□□□□ 0.86
PCDH9Q9HC56 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 AC142086.2-201ENST00000569753 217 ntBASIC20.42■□□□□ 0.86
PCDH9Q9HC56 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH9Q9HC56 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 DUSP5P2-201ENST00000426873 1033 ntBASIC20.41■□□□□ 0.86
PCDH9Q9HC56 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH9Q9HC56 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 C2orf69P4-201ENST00000565394 541 ntBASIC20.4■□□□□ 0.86
PCDH9Q9HC56 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PCDH9Q9HC56 AP001271.2-201ENST00000624018 1556 ntBASIC20.4■□□□□ 0.86
PCDH9Q9HC56 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.39■□□□□ 0.86
PCDH9Q9HC56 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PCDH9Q9HC56 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms