Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SUGP2-212ENST00000598863 551 ntTSL 319.04■□□□□ 0.647e-7■■□□□ 11.5
U2AF1Q01081 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.31e-10■■□□□ 11.5
U2AF1Q01081 AZIN1-202ENST00000347770 2857 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.581e-10■■□□□ 11.5
U2AF1Q01081 AZIN1-209ENST00000522311 872 ntTSL 35.88□□□□□ -1.471e-10■■□□□ 11.5
U2AF1Q01081 AZIN1-208ENST00000521536 680 ntTSL 55.16□□□□□ -1.581e-10■■□□□ 11.5
U2AF1Q01081 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.583e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.09■■■□□ 2.573e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-219ENST00000542908 1178 ntTSL 230.56■■■□□ 2.483e-6■■□□□ 11.5
U2AF1Q01081 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.07■■■□□ 2.43e-6■■□□□ 11.5
U2AF1Q01081 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.91■■■□□ 2.383e-6■■□□□ 11.5
U2AF1Q01081 KMT2D-203ENST00000547610 636 ntTSL 528.78■■■□□ 2.24e-8■■□□□ 11.5
U2AF1Q01081 ATG16L2-202ENST00000435507 2254 ntTSL 228.34■■■□□ 2.133e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-212ENST00000538973 1456 ntTSL 528.11■■■□□ 2.093e-6■■□□□ 11.5
U2AF1Q01081 HGFAC-202ENST00000506132 743 ntTSL 224.68■■□□□ 1.543e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-206ENST00000535830 963 ntTSL 224.12■■□□□ 1.453e-6■■□□□ 11.5
U2AF1Q01081 LINC01089-210ENST00000543167 1059 ntTSL 223.24■■□□□ 1.313e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-217ENST00000541999 537 ntTSL 322.93■■□□□ 1.263e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-207ENST00000536995 4577 ntTSL 221.75■■□□□ 1.073e-6■■□□□ 11.5
U2AF1Q01081 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.74■■□□□ 1.073e-6■■□□□ 11.5
U2AF1Q01081 LINC01089-203ENST00000535614 480 ntTSL 421.51■■□□□ 1.033e-6■■□□□ 11.5
U2AF1Q01081 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.913e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-215ENST00000541367 1575 ntTSL 520.52■□□□□ 0.883e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-220ENST00000544490 3731 ntTSL 219.35■□□□□ 0.693e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-213ENST00000540222 1400 ntTSL 519.01■□□□□ 0.633e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-203ENST00000439504 3841 ntTSL 1 (best)18.12■□□□□ 0.493e-6■■□□□ 11.5
U2AF1Q01081 ATG16L2-210ENST00000537837 784 ntTSL 518.02■□□□□ 0.483e-6■■□□□ 11.5
U2AF1Q01081 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC17.63■□□□□ 0.412e-11■■□□□ 11.5
U2AF1Q01081 ATG16L2-216ENST00000541554 295 ntTSL 316.62■□□□□ 0.253e-6■■□□□ 11.5
U2AF1Q01081 USP34-213ENST00000482250 515 ntTSL 315.25■□□□□ 0.033e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-209ENST00000489024 4084 ntTSL 510.58□□□□□ -0.723e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC9.69□□□□□ -0.863e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-210ENST00000496383 3220 ntTSL 59.33□□□□□ -0.923e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-213ENST00000638224 806 ntTSL 58.43□□□□□ -1.063e-6■■□□□ 11.5
U2AF1Q01081 USP34-216ENST00000487547 612 ntTSL 37.79□□□□□ -1.163e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-212ENST00000569008 8735 ntTSL 57.6□□□□□ -1.193e-6■■□□□ 11.5
U2AF1Q01081 KIDINS220-208ENST00000488729 5988 ntTSL 1 (best)6.9□□□□□ -1.33e-6■■□□□ 11.5
U2AF1Q01081 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.324e-8■■□□□ 11.5
U2AF1Q01081 KIDINS220-205ENST00000471685 593 ntTSL 45.06□□□□□ -1.63e-6■■□□□ 11.5
U2AF1Q01081 USP34-209ENST00000468703 228 ntTSL 53.81□□□□□ -1.83e-6■■□□□ 11.5
U2AF1Q01081 SRSF3-207ENST00000620389 2655 ntTSL 29.99□□□□□ -0.816e-13■■□□□ 11.5
U2AF1Q01081 SRSF3-205ENST00000614136 2376 nt6.66□□□□□ -1.346e-13■■□□□ 11.5
U2AF1Q01081 NUP214-226ENST00000531600 1775 ntTSL 214.73□□□□□ -0.054e-7■■□□□ 11.5
U2AF1Q01081 NUP214-204ENST00000453861 3208 ntTSL 512.69□□□□□ -0.384e-7■■□□□ 11.5
U2AF1Q01081 NUP214-205ENST00000465486 1068 ntTSL 1 (best)11.73□□□□□ -0.534e-7■■□□□ 11.5
U2AF1Q01081 NUP214-206ENST00000470765 620 ntTSL 511.73□□□□□ -0.534e-7■■□□□ 11.5
U2AF1Q01081 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC10.57□□□□□ -0.724e-7■■□□□ 11.5
U2AF1Q01081 NUP214-218ENST00000528114 575 ntTSL 410.55□□□□□ -0.724e-7■■□□□ 11.5
U2AF1Q01081 NUP214-227ENST00000531929 593 ntTSL 42.65□□□□□ -1.994e-7■■□□□ 11.5
U2AF1Q01081 PABPN1-206ENST00000556809 969 ntTSL 230.02■■■□□ 2.41e-7■■□□□ 11.5
U2AF1Q01081 SON-209ENST00000457208 765 ntTSL 39.76□□□□□ -0.856e-8■■□□□ 11.5
U2AF1Q01081 SON-213ENST00000473102 575 ntTSL 59.59□□□□□ -0.876e-8■■□□□ 11.5
U2AF1Q01081 SON-218ENST00000484294 500 ntTSL 59.59□□□□□ -0.876e-8■■□□□ 11.5
U2AF1Q01081 SON-211ENST00000467616 676 ntTSL 56.82□□□□□ -1.326e-8■■□□□ 11.5
U2AF1Q01081 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.572e-7■■□□□ 11.5
U2AF1Q01081 WDR59-223ENST00000616369 1953 ntTSL 1 (best) BASIC15.02□□□□□ -0.012e-7■■□□□ 11.5
U2AF1Q01081 WDR59-217ENST00000569229 901 ntTSL 513.63□□□□□ -0.232e-7■■□□□ 11.5
U2AF1Q01081 WDR59-205ENST00000562371 562 ntTSL 213.28□□□□□ -0.282e-7■■□□□ 11.5
U2AF1Q01081 WDR59-219ENST00000569549 934 ntTSL 59.9□□□□□ -0.822e-7■■□□□ 11.5
U2AF1Q01081 ZBED5-205ENST00000526852 789 ntTSL 422.01■■□□□ 1.114e-6■■□□□ 11.5
U2AF1Q01081 ZBED5-210ENST00000534690 879 ntTSL 418.45■□□□□ 0.544e-6■■□□□ 11.5
U2AF1Q01081 ZBED5-203ENST00000525350 3677 ntTSL 23.72□□□□□ -1.814e-6■■□□□ 11.5
U2AF1Q01081 DDB1-218ENST00000540784 1119 ntTSL 320.72■□□□□ 0.912e-7■■□□□ 11.4
U2AF1Q01081 DDB1-216ENST00000539739 1624 ntTSL 520.57■□□□□ 0.882e-7■■□□□ 11.4
U2AF1Q01081 DDB1-207ENST00000535967 1404 ntTSL 316.88■□□□□ 0.292e-7■■□□□ 11.4
U2AF1Q01081 DDB1-209ENST00000537877 1375 ntTSL 216.39■□□□□ 0.212e-7■■□□□ 11.4
U2AF1Q01081 NXF1-208ENST00000531131 1023 ntTSL 2 BASIC15.24■□□□□ 0.032e-7■■□□□ 11.4
U2AF1Q01081 DDB1-202ENST00000414411 1904 ntTSL 213.17□□□□□ -0.32e-7■■□□□ 11.4
U2AF1Q01081 DDB1-204ENST00000535147 2789 ntTSL 213.12□□□□□ -0.312e-7■■□□□ 11.4
U2AF1Q01081 CTAGE5-202ENST00000280083 3860 ntTSL 1 (best) BASIC16.06■□□□□ 0.163e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-206ENST00000396158 3695 ntTSL 1 (best) BASIC14.34□□□□□ -0.113e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-214ENST00000556148 2526 ntTSL 1 (best) BASIC13.61□□□□□ -0.233e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-203ENST00000341502 4091 ntTSL 1 (best) BASIC13.11□□□□□ -0.313e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-205ENST00000348007 2762 ntTSL 1 (best) BASIC11.92□□□□□ -0.53e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.71□□□□□ -1.173e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.64□□□□□ -1.193e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC7.23□□□□□ -1.253e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.89□□□□□ -1.313e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.343e-6■■□□□ 11.4
U2AF1Q01081 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6.07□□□□□ -1.443e-6■■□□□ 11.4
U2AF1Q01081 ASNS-207ENST00000437657 745 ntTSL 59.73□□□□□ -0.851e-13■■□□□ 11.4
U2AF1Q01081 SLC17A9-206ENST00000487303 507 ntTSL 222.31■■□□□ 1.164e-12■■□□□ 11.4
U2AF1Q01081 SRSF1-202ENST00000578430 689 ntTSL 217.82■□□□□ 0.446e-10■■□□□ 11.4
U2AF1Q01081 AC005726.2-203ENST00000584196 2103 ntTSL 225.37■■□□□ 1.654e-8■■□□□ 11.4
U2AF1Q01081 SGK494-203ENST00000469832 602 ntTSL 320.07■□□□□ 0.84e-8■■□□□ 11.4
U2AF1Q01081 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.96■□□□□ 0.634e-8■■□□□ 11.4
U2AF1Q01081 SGK494-212ENST00000581199 866 ntTSL 1 (best)18.3■□□□□ 0.524e-8■■□□□ 11.4
U2AF1Q01081 GRIPAP1-201ENST00000376423 3031 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.24e-8■■□□□ 11.4
U2AF1Q01081 SGK494-207ENST00000527863 598 ntTSL 216.21■□□□□ 0.194e-8■■□□□ 11.4
U2AF1Q01081 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC15.83■□□□□ 0.124e-8■■□□□ 11.4
U2AF1Q01081 GRIPAP1-212ENST00000619149 2828 ntTSL 215.67■□□□□ 0.14e-8■■□□□ 11.4
U2AF1Q01081 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC15.42■□□□□ 0.064e-8■■□□□ 11.4
U2AF1Q01081 SGK494-201ENST00000301037 1233 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.054e-8■■□□□ 11.4
U2AF1Q01081 SGK494-209ENST00000530121 581 ntTSL 315.35■□□□□ 0.054e-8■■□□□ 11.4
U2AF1Q01081 SGK494-205ENST00000525510 559 ntTSL 415.03■□□□□ -04e-8■■□□□ 11.4
U2AF1Q01081 SGK494-206ENST00000526073 571 ntTSL 414.91□□□□□ -0.024e-8■■□□□ 11.4
U2AF1Q01081 SGK494-208ENST00000527918 632 ntTSL 213.8□□□□□ -0.24e-8■■□□□ 11.4
U2AF1Q01081 NUP214-215ENST00000525980 2274 ntTSL 211.5□□□□□ -0.577e-8■■□□□ 11.4
U2AF1Q01081 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)15.6■□□□□ 0.093e-10■■□□□ 11.4
U2AF1Q01081 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)11.82□□□□□ -0.523e-10■■□□□ 11.4
Retrieved 100 of 10,096 protein–RNA pairs in 572.7 ms