Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL121916.1-201ENST00000429405 308 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC6.92□□□□□ -1.3
USP39Q53GS9 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.92□□□□□ -1.3
USP39Q53GS9 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.92□□□□□ -1.3
USP39Q53GS9 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 NANOGP9-201ENST00000439890 892 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 SNRPBP1-201ENST00000443634 282 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 RAD1P2-201ENST00000446414 663 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC097359.1-201ENST00000447946 463 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 RBMY3AP-201ENST00000449381 1145 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 AC104339.1-201ENST00000465478 348 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 RN7SL379P-201ENST00000479912 293 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 RPS10P20-201ENST00000494130 463 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC6.92□□□□□ -1.3
USP39Q53GS9 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.92□□□□□ -1.3
USP39Q53GS9 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AC087752.2-201ENST00000521219 281 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.92□□□□□ -1.3
USP39Q53GS9 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
USP39Q53GS9 TOMM20P1-201ENST00000534518 427 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 TDGP1-201ENST00000543961 1229 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 ULK4P1-202ENST00000565174 503 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 PPIAP14-201ENST00000577627 496 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AL139041.1-201ENST00000605480 610 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC139792.2-201ENST00000624218 587 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC097372.4-201ENST00000625025 466 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AL356118.1-201ENST00000635272 1078 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 AC013437.2-201ENST00000639587 677 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
USP39Q53GS9 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
USP39Q53GS9 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.92□□□□□ -1.3
USP39Q53GS9 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 NR1H5P-201ENST00000452683 1377 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
USP39Q53GS9 AP002800.1-201ENST00000624982 2225 ntBASIC6.92□□□□□ -1.3
USP39Q53GS9 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
USP39Q53GS9 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AL358913.2-201ENST00000553881 1548 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC139426.3-201ENST00000605648 2059 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
USP39Q53GS9 RN7SKP269-201ENST00000365545 319 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 PPIAP26-201ENST00000377951 522 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 MIR122-201ENST00000385044 85 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 UBBP1-201ENST00000392399 473 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.91□□□□□ -1.3
USP39Q53GS9 LSM3P3-201ENST00000436601 306 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 MTCO2P20-201ENST00000437339 673 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 SEPT14P12-201ENST00000442280 560 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 MTCO2P3-201ENST00000442543 421 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 RPS10P18-201ENST00000442662 495 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.91□□□□□ -1.3
USP39Q53GS9 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC6.91□□□□□ -1.3
USP39Q53GS9 ART2BP-201ENST00000453501 499 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 MTND2P6-201ENST00000455337 1030 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 RN7SL160P-201ENST00000468558 284 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC6.91□□□□□ -1.3
USP39Q53GS9 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.91□□□□□ -1.3
USP39Q53GS9 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC6.91□□□□□ -1.3
USP39Q53GS9 DUXAP5-201ENST00000529668 529 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC025283.1-201ENST00000572039 734 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AC134669.1-201ENST00000581275 672 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.91□□□□□ -1.3
USP39Q53GS9 AC006116.7-201ENST00000590141 756 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AC133794.1-201ENST00000602731 914 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 ABI1P1-201ENST00000603375 1120 ntBASIC6.91□□□□□ -1.3
USP39Q53GS9 AC009464.1-201ENST00000615731 469 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms