Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC5.97□□□□□ -1.45
HOXD4P09016 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXD4P09016 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXD4P09016 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
HOXD4P09016 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
HOXD4P09016 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXD4P09016 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXD4P09016 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.96□□□□□ -1.45
HOXD4P09016 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXD4P09016 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HOXD4P09016 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HOXD4P09016 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AL359694.1-201ENST00000403247 604 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 RN7SKP129-201ENST00000410288 299 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 RNA5SP115-201ENST00000411160 107 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 OR5W1P-201ENST00000423705 938 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXD4P09016 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AL389925.1-201ENST00000432257 728 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC092106.2-201ENST00000436597 487 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXD4P09016 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC005017.1-201ENST00000482002 490 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC021006.1-201ENST00000489849 553 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC117500.1-201ENST00000497352 755 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 USP9YP2-201ENST00000504503 1000 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC113367.2-201ENST00000505749 160 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 USP9YP1-201ENST00000513521 1002 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 RN7SKP67-201ENST00000515905 235 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXD4P09016 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXD4P09016 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXD4P09016 OR1E3-201ENST00000575608 948 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 SNORA70D-201ENST00000578836 135 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC245052.7-201ENST00000601161 359 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AC004241.2-201ENST00000614562 444 ntBASIC5.96□□□□□ -1.46
HOXD4P09016 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXD4P09016 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXD4P09016 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXD4P09016 COG2-209ENST00000534989 2963 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXD4P09016 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXD4P09016 AL591848.4-201ENST00000567832 3472 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 LRRC37A15P-201ENST00000514785 1355 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HOXD4P09016 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HOXD4P09016 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
HOXD4P09016 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXD4P09016 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXD4P09016 AL359092.1-201ENST00000417156 265 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC245452.2-201ENST00000435222 392 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 ARMC4P1-201ENST00000438905 707 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXD4P09016 SNRPCP3-201ENST00000474888 476 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 RN7SL165P-201ENST00000477476 291 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AC117395.1-201ENST00000487390 403 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXD4P09016 AC018797.1-201ENST00000510791 255 ntBASIC5.95□□□□□ -1.46
HOXD4P09016 LECT2-203ENST00000512872 762 ntTSL 5 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms