Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 RNA5SP321-201ENST00000362722 111 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 PFN1P11-201ENST00000445829 389 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL034369.1-201ENST00000453808 477 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 RPL7AP23-201ENST00000482625 776 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 RN7SL37P-201ENST00000490461 307 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC095057.1-201ENST00000507583 168 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 ANP32BP1-202ENST00000568553 737 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 PPIAP14-201ENST00000577627 496 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC019257.2-201ENST00000605539 497 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 MIR6885-201ENST00000612241 66 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC131009.3-201ENST00000621809 287 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AL035425.4-201ENST00000624509 1063 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 CLUHP10-201ENST00000631979 980 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC096992.2-201ENST00000609553 1684 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 ENO1P4-201ENST00000416471 1785 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 OR4G1P-202ENST00000641173 1788 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC010132.4-201ENST00000569883 1368 ntBASIC6.79□□□□□ -1.32
DKK3Q9UBP4 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
DKK3Q9UBP4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 UG0898H09-202ENST00000623646 7040 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 RNA5SP65-201ENST00000363166 119 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 RN7SKP269-201ENST00000365545 319 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 MT-RNR1-201ENST00000389680 954 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 SNORA11B-201ENST00000408175 129 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 GABARAPL3-201ENST00000412799 354 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AL596268.1-201ENST00000427910 1048 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AC239367.3-201ENST00000428996 814 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 RPL17P35-201ENST00000432217 549 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
DKK3Q9UBP4 REG1CP-206ENST00000447469 496 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 RPL26P30-201ENST00000453533 435 ntBASIC6.78□□□□□ -1.32
DKK3Q9UBP4 AKR1D1P1-201ENST00000457236 936 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms