Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 RNA5SP188-201ENST00000362916 129 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 MIR99A-201ENST00000384906 81 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 CHCHD4P5-201ENST00000436684 427 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC084337.1-201ENST00000524809 686 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC007068.2-201ENST00000543168 395 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 PPIAP14-201ENST00000577627 496 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC100832.2-201ENST00000582080 776 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 RPS27AP19-201ENST00000597285 458 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC004241.2-201ENST00000614562 444 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 TCL6_3.1-201ENST00000619064 137 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC114546.4-201ENST00000624413 369 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC022613.3-201ENST00000560740 1346 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC010624.4-201ENST00000597606 1351 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 AC004023.1-201ENST00000561473 1744 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 IMMTP1-201ENST00000435590 2219 ntBASIC5.62□□□□□ -1.51
NKX3-1Q99801 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
NKX3-1Q99801 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
NKX3-1Q99801 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 SNORA38B-201ENST00000363524 131 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 RN7SKP189-201ENST00000365042 330 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 RN7SKP205-201ENST00000410999 307 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 RPL3P11-201ENST00000434028 1146 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 PSMD8P1-201ENST00000436275 769 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL451063.1-201ENST00000450164 1133 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 OR52H2P-201ENST00000514607 902 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC123769.1-201ENST00000530992 3192 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 LINC01616-201ENST00000561816 2280 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC027796.1-201ENST00000575593 512 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 MIR4312-201ENST00000579909 76 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 WDR45BP1-201ENST00000583470 1029 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC5.61□□□□□ -1.51
NKX3-1Q99801 SNORD96A-201ENST00000606577 79 ntBASIC5.61□□□□□ -1.51
NKX3-1Q99801 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms