Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPSAP60-201ENST00000415403 880 ntBASIC6.53□□□□□ -1.36
MSX2P35548 TAS2R2P-201ENST00000421146 910 ntBASIC6.53□□□□□ -1.36
MSX2P35548 USP9YP14-201ENST00000430663 563 ntBASIC6.53□□□□□ -1.36
MSX2P35548 RPS6P15-201ENST00000431996 751 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX2P35548 MTND4P32-201ENST00000437189 1237 ntBASIC6.53□□□□□ -1.36
MSX2P35548 FDPSP8-201ENST00000438304 1089 ntBASIC6.53□□□□□ -1.36
MSX2P35548 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.53□□□□□ -1.36
MSX2P35548 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 OR6K5P-201ENST00000447050 945 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 MTND1P29-201ENST00000448112 647 ntBASIC6.53□□□□□ -1.36
MSX2P35548 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 AC117392.1-201ENST00000487061 596 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 AC069306.1-201ENST00000507006 843 ntBASIC6.53□□□□□ -1.36
MSX2P35548 RPL37-205ENST00000509877 637 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC111000.6-201ENST00000514471 709 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 HAUS1P3-201ENST00000523909 662 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 AC118942.1-201ENST00000529674 1035 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.53□□□□□ -1.36
MSX2P35548 OSBPL9P3-201ENST00000534523 595 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC007834.2-201ENST00000536310 343 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.53□□□□□ -1.36
MSX2P35548 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 AL442163.2-201ENST00000553912 710 ntBASIC6.53□□□□□ -1.36
MSX2P35548 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC120498.6-201ENST00000564700 338 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 EEF1B2P1-201ENST00000567221 672 ntBASIC6.53□□□□□ -1.36
MSX2P35548 MIR4301-201ENST00000577203 66 ntBASIC6.53□□□□□ -1.36
MSX2P35548 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC006120.1-201ENST00000579375 546 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 AL358072.1-201ENST00000604156 575 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC005252.1-201ENST00000604518 1063 ntBASIC6.53□□□□□ -1.36
MSX2P35548 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC008759.3-201ENST00000613300 508 ntBASIC6.53□□□□□ -1.36
MSX2P35548 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 AC092140.2-201ENST00000618027 521 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC011330.2-201ENST00000621680 635 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC211433.3-201ENST00000623770 375 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC098679.4-201ENST00000624241 654 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX2P35548 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 AL669831.5-218ENST00000591702 1873 ntBASIC6.53□□□□□ -1.36
MSX2P35548 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX2P35548 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX2P35548 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX2P35548 AC025809.2-201ENST00000625085 1802 ntBASIC6.53□□□□□ -1.36
MSX2P35548 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
MSX2P35548 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 MFSD8-220ENST00000641243 1422 ntBASIC6.52□□□□□ -1.37
MSX2P35548 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX2P35548 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX2P35548 AC073365.1-203ENST00000641055 1992 ntBASIC6.52□□□□□ -1.37
MSX2P35548 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 CPSF4L-201ENST00000344935 647 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
MSX2P35548 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 CASP3-203ENST00000393588 677 ntTSL 4 BASIC6.52□□□□□ -1.37
MSX2P35548 AMZ2P2-201ENST00000406819 1057 ntBASIC6.52□□□□□ -1.37
MSX2P35548 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 AC006013.1-201ENST00000424888 758 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 RPP40P1-201ENST00000426762 456 ntBASIC6.52□□□□□ -1.37
MSX2P35548 CLNS1AP1-201ENST00000435954 682 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC6.52□□□□□ -1.37
MSX2P35548 AC002553.1-201ENST00000442828 802 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 CYCSP44-201ENST00000448560 313 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC112492.1-201ENST00000449607 712 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC093799.1-201ENST00000452411 499 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC114755.1-201ENST00000453101 868 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms