Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 MT-RNR1-201ENST00000389680 954 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 FDPSP5-201ENST00000399474 1057 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AL353133.1-201ENST00000407695 401 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 RNU2-72P-201ENST00000411175 163 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 RANP6-201ENST00000413691 644 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 VN1R53P-201ENST00000429536 957 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 UBBP5-201ENST00000446970 266 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC009567.2-201ENST00000502989 349 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AK6-204ENST00000512561 587 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 MINOS1P4-201ENST00000515470 318 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 RNU6-467P-201ENST00000517027 110 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC008429.2-201ENST00000523057 864 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 CASP1P2-201ENST00000526830 1258 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC009268.1-201ENST00000561352 1203 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AL078623.1-201ENST00000602702 907 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC010998.3-201ENST00000613871 631 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC104307.1-201ENST00000616142 196 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 SNX18P10-201ENST00000625014 519 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 TEX41-279ENST00000629149 609 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 PSMC1P6-201ENST00000477233 1319 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC006213.6-201ENST00000623722 4179 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 CDY10P-201ENST00000452415 1567 ntBASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
CDK5RAP3Q96JB5 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RNA5SP333-201ENST00000363466 118 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RN7SKP118-201ENST00000364331 330 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RNA5SP512-201ENST00000364550 120 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RNA5SP334-201ENST00000364825 118 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC092634.1-201ENST00000366505 199 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 CDC42P6-201ENST00000421246 576 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AP003385.1-201ENST00000426387 893 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 MAPRE1P3-201ENST00000435438 796 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 GAPDHP33-201ENST00000443168 1013 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RPS3AP49-201ENST00000472161 790 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RPL5P33-201ENST00000487833 905 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RNU6-1334P-201ENST00000516032 105 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC130364.2-201ENST00000528639 604 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OR52K3P-201ENST00000531655 943 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 HNRNPA1P74-201ENST00000560782 835 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 AL157899.1-201ENST00000604110 936 ntBASIC7.4□□□□□ -1.22
CDK5RAP3Q96JB5 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms