Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 AC068020.1-201ENST00000594215 661 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 PLEKHA3P1-201ENST00000598554 894 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC130352.1-201ENST00000602979 661 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AL133247.2-201ENST00000603236 482 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 AC012511.1-201ENST00000608140 449 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC8.09□□□□□ -1.11
HMGB1P09429 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC8.09□□□□□ -1.11
HMGB1P09429 SAMMSON-209ENST00000641222 1100 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 DLEU2L-201ENST00000371086 3555 ntBASIC8.09□□□□□ -1.11
HMGB1P09429 ING3-204ENST00000431467 1447 ntTSL 2 BASIC8.09□□□□□ -1.11
HMGB1P09429 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
HMGB1P09429 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HMGB1P09429 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC8.09□□□□□ -1.11
HMGB1P09429 AC132825.1-201ENST00000463573 2247 ntBASIC8.09□□□□□ -1.12
HMGB1P09429 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.12
HMGB1P09429 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
HMGB1P09429 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 AL713922.1-201ENST00000416477 747 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC8.08□□□□□ -1.12
HMGB1P09429 OR5W1P-201ENST00000423705 938 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 SNX19-202ENST00000426933 888 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 PUDPP2-201ENST00000431423 643 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HMGB1P09429 RN7SL492P-201ENST00000460700 295 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC8.08□□□□□ -1.12
HMGB1P09429 RNU6-889P-201ENST00000517189 103 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 IGHVIII-47-1-201ENST00000518187 331 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 CD24P2-201ENST00000565486 219 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AC091932.1-201ENST00000569381 427 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 WBP1LP11-201ENST00000586141 328 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC8.08□□□□□ -1.12
HMGB1P09429 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC8.08□□□□□ -1.12
HMGB1P09429 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 AC107308.1-201ENST00000615897 301 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC8.08□□□□□ -1.12
HMGB1P09429 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 AC015689.2-201ENST00000528172 1738 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 FO082842.1-201ENST00000423552 1370 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AC093844.1-201ENST00000514910 1361 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AC096992.2-201ENST00000609553 1684 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC8.08□□□□□ -1.12
HMGB1P09429 AP001284.1-201ENST00000528393 2118 ntBASIC8.08□□□□□ -1.12
HMGB1P09429 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HMGB1P09429 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 JPX-212ENST00000639185 9658 ntTSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HMGB1P09429 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HMGB1P09429 NEK2P2-201ENST00000438441 1338 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 AC022819.1-201ENST00000563495 3910 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 AC007342.7-201ENST00000624610 2337 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
HMGB1P09429 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HMGB1P09429 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HMGB1P09429 MIR99A-201ENST00000384906 81 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
HMGB1P09429 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 AL391422.1-201ENST00000402155 436 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 AC024937.2-201ENST00000411669 1242 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 RPL26P37-201ENST00000411983 438 ntBASIC8.07□□□□□ -1.12
HMGB1P09429 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC8.07□□□□□ -1.12
HMGB1P09429 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC8.07□□□□□ -1.12
HMGB1P09429 MEG8-201ENST00000414488 800 ntTSL 3 BASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms