Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
HDDC3Q8N4P3 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.63□□□□□ -1.35
HDDC3Q8N4P3 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.63□□□□□ -1.35
HDDC3Q8N4P3 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AC022613.3-201ENST00000560740 1346 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 MIR188-201ENST00000385034 86 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AL049697.3-201ENST00000406493 982 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 GTF3AP6-201ENST00000432585 986 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 GTF2IP14-201ENST00000441415 586 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 RN7SL214P-201ENST00000487317 265 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 RPL19P11-201ENST00000495944 589 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AL589863.1-201ENST00000595383 631 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AC131009.3-201ENST00000621809 287 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AC026124.2-201ENST00000621847 656 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 AL450226.2-201ENST00000622913 439 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 MIR4302-201ENST00000638058 60 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 RAD17P2-201ENST00000451754 1977 ntBASIC6.62□□□□□ -1.35
HDDC3Q8N4P3 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 RANP7-201ENST00000418085 644 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AMYP1-201ENST00000440059 1023 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 COX4I1P2-201ENST00000447446 547 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 HMGB1P7-201ENST00000450921 612 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC104109.1-201ENST00000498563 436 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC111000.5-201ENST00000506559 1178 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 NPIPB14P-203ENST00000532298 987 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL162632.2-201ENST00000553933 399 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 FXNP1-201ENST00000555153 337 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 RN7SL208P-201ENST00000577964 296 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC004805.3-201ENST00000603178 310 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC005277.2-201ENST00000617898 390 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL354718.1-201ENST00000619764 589 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AC120057.5-201ENST00000623840 154 ntBASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.61□□□□□ -1.35
HDDC3Q8N4P3 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms