Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC022613.3-201ENST00000560740 1346 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 MRPS17P1-201ENST00000596009 3130 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
USP39Q53GS9 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
USP39Q53GS9 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 MTCO2P1-201ENST00000424648 477 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 NPM1P25-201ENST00000429734 854 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC074367.1-201ENST00000438685 1125 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 MARK2P8-201ENST00000476069 952 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 RN7SL797P-201ENST00000486314 297 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 PFN2-217ENST00000498307 556 ntTSL 4 BASIC7.04□□□□□ -1.28
USP39Q53GS9 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC034244.2-201ENST00000514668 858 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 IGHVII-60-1-201ENST00000519079 256 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC7.04□□□□□ -1.28
USP39Q53GS9 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC7.04□□□□□ -1.28
USP39Q53GS9 DIMT1P1-201ENST00000603970 763 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC073111.2-201ENST00000605657 1075 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC063962.1-201ENST00000608199 521 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC130448.2-201ENST00000624082 374 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 AC010608.3-201ENST00000625048 527 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC7.04□□□□□ -1.28
USP39Q53GS9 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC068446.1-201ENST00000556425 1549 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 MAPK10-270ENST00000641102 3538 ntBASIC7.04□□□□□ -1.28
USP39Q53GS9 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
USP39Q53GS9 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.04□□□□□ -1.28
USP39Q53GS9 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.03□□□□□ -1.28
USP39Q53GS9 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC102941.1-201ENST00000567616 1537 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.03□□□□□ -1.28
USP39Q53GS9 CDY19P-201ENST00000411668 1613 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 CDY18P-201ENST00000438294 1609 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 RNU6-1017P-201ENST00000363613 106 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 SNORA70G-201ENST00000383923 142 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
USP39Q53GS9 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
USP39Q53GS9 UBTFL2-201ENST00000411859 1191 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 HSFY4P-201ENST00000415994 1181 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 MORF4L1P5-201ENST00000433352 961 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 RPL5P10-201ENST00000445207 894 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC007383.1-201ENST00000445875 636 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AL358876.1-201ENST00000453364 1075 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AC069277.2-201ENST00000454211 432 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC7.03□□□□□ -1.28
USP39Q53GS9 AC021074.2-201ENST00000468434 172 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 PGBD4P1-201ENST00000473644 407 ntBASIC7.03□□□□□ -1.28
USP39Q53GS9 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms