Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc40Q8BI79 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc40Q8BI79 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.83■□□□□ 0.44
Ccdc40Q8BI79 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc40Q8BI79 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.81■□□□□ 0.44
Ccdc40Q8BI79 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Gm42545-201ENSMUST00000202755 922 ntBASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc40Q8BI79 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Gm5643-201ENSMUST00000117081 966 ntBASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms