Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC121758.1-202ENST00000556917 658 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 MT1B-202ENST00000562399 351 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC005951.1-201ENST00000576706 485 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 EIF4A3P1-201ENST00000578499 647 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC127071.2-201ENST00000623293 527 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC068213.1-201ENST00000625124 226 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AL139254.2-202ENST00000641937 1156 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 TMC3-AS1-206ENST00000612811 2726 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 RNU1-5P-201ENST00000362684 144 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 SNORA7A-201ENST00000384765 139 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC019178.1-201ENST00000392337 440 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 RBBP4P5-201ENST00000398583 1266 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 CDC42P6-201ENST00000421246 576 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 HNRNPA1P30-201ENST00000424329 751 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 HMGB3P5-201ENST00000428894 612 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AK3P5-201ENST00000432033 519 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 CETN4P-201ENST00000432407 469 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC104698.1-201ENST00000435671 276 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 RPL12P11-201ENST00000439970 501 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 DEFA11P-201ENST00000446470 261 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 CCNJP1-201ENST00000450600 1149 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AL445669.2-201ENST00000454425 421 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC118758.1-202ENST00000454719 225 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 PPP1R2P6-201ENST00000478565 588 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC147055.1-201ENST00000509261 750 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC027176.2-201ENST00000559166 746 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC009955.2-201ENST00000597288 542 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 DUSP22-216ENST00000605863 551 ntTSL 4 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC005828.7-201ENST00000607331 556 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC005393.1-201ENST00000617916 584 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AL356490.1-201ENST00000623079 479 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AP003072.5-201ENST00000623872 773 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms