Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 SNORD35A-201ENST00000363389 86 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 FDPSP5-201ENST00000399474 1057 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 GAPDHP57-201ENST00000424400 585 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 GAPDHP20-201ENST00000444107 1007 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 MEF2AP1-201ENST00000454867 863 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC083806.1-201ENST00000468934 316 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC037479.1-201ENST00000558361 625 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 RN7SL366P-201ENST00000577957 292 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC012368.3-201ENST00000604190 219 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AL049840.6-201ENST00000604583 345 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AL590032.1-201ENST00000604920 252 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC011891.2-201ENST00000604949 397 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AL035410.2-201ENST00000604963 864 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC089999.3-201ENST00000622440 577 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AL596275.2-203ENST00000641951 371 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 ZNF806-201ENST00000438300 1774 ntBASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HDDC3Q8N4P3 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC132219.2-201ENST00000624416 2327 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 UBBP1-201ENST00000392399 473 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 RPS10P21-201ENST00000430654 475 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AL354893.1-201ENST00000433735 348 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 EIF5AP4-201ENST00000441206 465 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 RPL23AP28-201ENST00000448062 470 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC135721.2-201ENST00000464237 300 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 RPS4XP23-201ENST00000487801 237 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 EEF1B2P2-201ENST00000519625 676 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AC140063.1-201ENST00000541343 259 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AP001962.1-201ENST00000624114 559 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AL049634.1-201ENST00000453770 1720 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 AL451064.2-201ENST00000623514 1654 ntBASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
HDDC3Q8N4P3 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 RN7SKP237-201ENST00000364663 301 ntBASIC6.85□□□□□ -1.31
HDDC3Q8N4P3 RN7SKP15-201ENST00000364742 309 ntBASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms