Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC7.54□□□□□ -1.2
CIITAP33076 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7.54□□□□□ -1.2
CIITAP33076 MRPS5P3-201ENST00000515577 166 ntBASIC7.54□□□□□ -1.2
CIITAP33076 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.54□□□□□ -1.2
CIITAP33076 MTND2P7-201ENST00000521337 640 ntBASIC7.54□□□□□ -1.2
CIITAP33076 OR4A13P-201ENST00000529316 942 ntBASIC7.54□□□□□ -1.2
CIITAP33076 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.54□□□□□ -1.2
CIITAP33076 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.54□□□□□ -1.2
CIITAP33076 AC107308.1-201ENST00000615897 301 ntBASIC7.54□□□□□ -1.2
CIITAP33076 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC7.54□□□□□ -1.2
CIITAP33076 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.54□□□□□ -1.2
CIITAP33076 TATDN2P3-201ENST00000452855 3665 ntBASIC7.54□□□□□ -1.2
CIITAP33076 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
CIITAP33076 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.54□□□□□ -1.2
CIITAP33076 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC7.54□□□□□ -1.2
CIITAP33076 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CIITAP33076 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.54□□□□□ -1.2
CIITAP33076 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC7.54□□□□□ -1.2
CIITAP33076 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 NCOA4P3-201ENST00000513203 1877 ntBASIC7.53□□□□□ -1.2
CIITAP33076 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.53□□□□□ -1.2
CIITAP33076 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.53□□□□□ -1.2
CIITAP33076 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
CIITAP33076 VIM2P-201ENST00000402383 1294 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AL033519.1-201ENST00000407266 307 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AL713922.1-201ENST00000416477 747 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AL359092.1-201ENST00000417156 265 ntBASIC7.53□□□□□ -1.2
CIITAP33076 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 AL356121.1-201ENST00000442911 156 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 SCARNA5-201ENST00000516201 276 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 OR9G2P-201ENST00000533326 880 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.53□□□□□ -1.2
CIITAP33076 AC015818.6-201ENST00000584274 634 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 AC005479.3-201ENST00000602790 431 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC093635.1-201ENST00000609028 555 ntBASIC7.53□□□□□ -1.2
CIITAP33076 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC005277.2-201ENST00000617898 390 ntBASIC7.53□□□□□ -1.2
CIITAP33076 MIR6503-201ENST00000622884 86 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC018692.2-201ENST00000624130 348 ntBASIC7.53□□□□□ -1.2
CIITAP33076 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC7.53□□□□□ -1.2
CIITAP33076 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC7.53□□□□□ -1.2
CIITAP33076 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.53□□□□□ -1.2
CIITAP33076 MTCO1P25-201ENST00000414449 1799 ntBASIC7.53□□□□□ -1.2
CIITAP33076 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.53□□□□□ -1.2
CIITAP33076 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CIITAP33076 AL137918.1-201ENST00000624542 1922 ntBASIC7.52□□□□□ -1.2
CIITAP33076 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.2
CIITAP33076 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.52□□□□□ -1.2
CIITAP33076 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC7.52□□□□□ -1.21
CIITAP33076 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.21
CIITAP33076 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.52□□□□□ -1.21
CIITAP33076 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC7.52□□□□□ -1.21
CIITAP33076 RNA5SP85-201ENST00000365378 119 ntBASIC7.52□□□□□ -1.21
CIITAP33076 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CIITAP33076 MRPS6P2-201ENST00000381143 370 ntBASIC7.52□□□□□ -1.21
CIITAP33076 MIR640-201ENST00000385086 96 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AC008171.1-201ENST00000395058 200 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AL929472.1-201ENST00000417484 429 ntBASIC7.52□□□□□ -1.21
CIITAP33076 Z82198.3-201ENST00000421145 199 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.52□□□□□ -1.21
CIITAP33076 RPEP4-201ENST00000437636 602 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AL031681.1-201ENST00000443304 400 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC7.52□□□□□ -1.21
CIITAP33076 CCNJP1-201ENST00000450600 1149 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC7.52□□□□□ -1.21
CIITAP33076 RN7SL836P-201ENST00000476140 296 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AC253576.1-201ENST00000511645 1156 ntBASIC7.52□□□□□ -1.21
CIITAP33076 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.52□□□□□ -1.21
CIITAP33076 PVT1-214ENST00000522875 922 ntTSL 5 BASIC7.52□□□□□ -1.21
CIITAP33076 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC7.52□□□□□ -1.21
CIITAP33076 AC012175.1-201ENST00000603755 531 ntBASIC7.52□□□□□ -1.21
CIITAP33076 SNORD96A-201ENST00000606577 79 ntBASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms