Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNA5SP177-201ENST00000410122 107 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 OR52N3P-201ENST00000413417 934 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AL138479.1-201ENST00000426913 484 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC018804.1-201ENST00000430381 618 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 RPS19P6-201ENST00000441327 433 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC091982.1-202ENST00000473923 343 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 MTND6P8-201ENST00000503471 522 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC021220.1-201ENST00000507445 630 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 LDHAP1-201ENST00000509421 992 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 NACAP6-201ENST00000509572 622 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AP003084.1-201ENST00000524828 742 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC079866.1-201ENST00000534985 1220 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 EIF4A3P1-201ENST00000578499 647 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC061975.3-201ENST00000583209 244 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 MIR3159-201ENST00000584572 74 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC012065.3-201ENST00000602736 439 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC026951.2-201ENST00000613847 241 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AP003072.5-201ENST00000623872 773 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 FO082842.1-201ENST00000423552 1370 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
NKX3-1Q99801 ZNF402P-201ENST00000404435 3100 ntBASIC5.89□□□□□ -1.47
NKX3-1Q99801 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
NKX3-1Q99801 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 OR2M1P-201ENST00000318104 951 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 RNA5SP429-201ENST00000363688 109 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 U3.14-201ENST00000365363 227 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 RNA5SP35-201ENST00000391257 129 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 FAUP2-201ENST00000394301 401 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC134879.1-201ENST00000426062 394 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 MTND1P10-201ENST00000426108 832 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 SULT1D1P-201ENST00000458020 882 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 RPS4XP19-201ENST00000460237 736 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC018639.1-201ENST00000492994 442 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC098799.1-201ENST00000504752 800 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 IGLVV-66-201ENST00000523818 341 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 OR4C1P-201ENST00000530880 937 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC007537.1-201ENST00000539347 327 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 LYZ-202ENST00000548839 558 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC092375.1-201ENST00000550410 637 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC067852.5-201ENST00000589299 310 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 OR7A11P-201ENST00000597719 953 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC005070.2-201ENST00000604391 260 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC122710.3-201ENST00000606566 541 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AL161420.1-201ENST00000619393 264 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC073862.4-201ENST00000622982 854 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AL356585.10-201ENST00000641883 123 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 KYNUP2-201ENST00000582280 1329 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC090774.4-201ENST00000578888 1372 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC006213.6-201ENST00000623722 4179 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms