Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 snR75snR75 89 nt-0.12□□□□□ -2.43
SSL2Q00578 snR161snR161 161 nt-0.16□□□□□ -2.44
SSL2Q00578 YJL113WYJL113W 4647 nt-0.23□□□□□ -2.45
SSL2Q00578 snR40snR40 97 nt-0.42□□□□□ -2.48
SSL2Q00578 URB1YKL014C 5295 nt-0.46□□□□□ -2.48
SSL2Q00578 CDC65tQ(CUG)M 72 nt-0.49□□□□□ -2.49
SSL2Q00578 snR6snR6 112 nt-0.5□□□□□ -2.49
SSL2Q00578 YOR335W-AYOR335W-A 81 nt-0.52□□□□□ -2.49
SSL2Q00578 YHL009W-BYHL009W-B 5409 nt-0.56□□□□□ -2.5
SSL2Q00578 snR33snR33 183 nt-0.61□□□□□ -2.51
SSL2Q00578 YMR315W-AYMR315W-A 108 nt-0.62□□□□□ -2.51
SSL2Q00578 YNR077CYNR077C 255 nt-0.63□□□□□ -2.51
SSL2Q00578 RPL41BYDL133C-A 78 nt-0.64□□□□□ -2.51
SSL2Q00578 tT(UGU)G1tT(UGU)G1 72 nt-0.67□□□□□ -2.52
SSL2Q00578 tT(UGU)G2tT(UGU)G2 72 nt-0.67□□□□□ -2.52
SSL2Q00578 tT(UGU)PtT(UGU)P 72 nt-0.67□□□□□ -2.52
SSL2Q00578 snR73snR73 106 nt-0.69□□□□□ -2.52
SSL2Q00578 tP(UGG)QtP(UGG)Q 72 nt-0.69□□□□□ -2.52
SSL2Q00578 YBR223W-AYBR223W-A 120 nt-0.86□□□□□ -2.55
SSL2Q00578 YOR309CYOR309C 381 nt-0.88□□□□□ -2.55
SSL2Q00578 tC(GCA)QtC(GCA)Q 76 nt-1.08□□□□□ -2.58
SSL2Q00578 snR58snR58 96 nt-1.09□□□□□ -2.58
SSL2Q00578 tY(GUA)QtY(GUA)Q 84 nt-1.16□□□□□ -2.6
SSL2Q00578 snR87snR87 109 nt-1.35□□□□□ -2.63
SSL2Q00578 YOL166W-AYOL166W-A 156 nt-1.81□□□□□ -2.7
SSL2Q00578 YBR126W-BYBR126W-B 144 nt-1.85□□□□□ -2.71
SSL2Q00578 YDR543CYDR543C 300 nt-1.95□□□□□ -2.72
SSL2Q00578 YJL136W-AYJL136W-A 84 nt-2.98□□□□□ -2.89
SSL2Q00578 YJR162CYJR162C 351 nt-3.06□□□□□ -2.9
Retrieved 29 of 7,029 protein–RNA pairs in 18 ms