Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 tP(UGG)QtP(UGG)Q 72 nt-0.49□□□□□ -2.49
SHP1P34223 CDC65tQ(CUG)M 72 nt-0.52□□□□□ -2.49
SHP1P34223 URB1YKL014C 5295 nt-0.52□□□□□ -2.49
SHP1P34223 tV(UAC)QtV(UAC)Q 76 nt-0.53□□□□□ -2.49
SHP1P34223 YGR122C-AYGR122C-A 129 nt-0.54□□□□□ -2.5
SHP1P34223 YDL247W-AYDL247W-A 75 nt-0.59□□□□□ -2.5
SHP1P34223 YDL114W-AYDL114W-A 114 nt-0.6□□□□□ -2.51
SHP1P34223 YMR315W-AYMR315W-A 108 nt-0.63□□□□□ -2.51
SHP1P34223 snR53snR53 91 nt-0.64□□□□□ -2.51
SHP1P34223 snR6snR6 112 nt-0.65□□□□□ -2.51
SHP1P34223 YOR335W-AYOR335W-A 81 nt-0.69□□□□□ -2.52
SHP1P34223 YLR149C-AYLR149C-A 87 nt-0.72□□□□□ -2.52
SHP1P34223 YOR309CYOR309C 381 nt-0.74□□□□□ -2.53
SHP1P34223 YBR223W-AYBR223W-A 120 nt-0.75□□□□□ -2.53
SHP1P34223 snR73snR73 106 nt-0.78□□□□□ -2.53
SHP1P34223 tY(GUA)QtY(GUA)Q 84 nt-0.84□□□□□ -2.54
SHP1P34223 RPL41BYDL133C-A 78 nt-0.93□□□□□ -2.56
SHP1P34223 YKL096C-BYKL096C-B 150 nt-0.98□□□□□ -2.57
SHP1P34223 YNR077CYNR077C 255 nt-0.99□□□□□ -2.57
SHP1P34223 snR40snR40 97 nt-1.06□□□□□ -2.58
SHP1P34223 snR87snR87 109 nt-1.22□□□□□ -2.6
SHP1P34223 YBR126W-BYBR126W-B 144 nt-1.25□□□□□ -2.61
SHP1P34223 snR75snR75 89 nt-1.32□□□□□ -2.62
SHP1P34223 snR58snR58 96 nt-1.33□□□□□ -2.62
SHP1P34223 tC(GCA)QtC(GCA)Q 76 nt-1.4□□□□□ -2.63
SHP1P34223 YDR543CYDR543C 300 nt-1.74□□□□□ -2.69
SHP1P34223 YOL166W-AYOL166W-A 156 nt-2.12□□□□□ -2.75
SHP1P34223 YJL136W-AYJL136W-A 84 nt-2.22□□□□□ -2.76
SHP1P34223 YJR162CYJR162C 351 nt-2.26□□□□□ -2.77
Retrieved 29 of 7,029 protein–RNA pairs in 2.8 ms