Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
COL8A1P27658 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.42■□□□□ 0.38
COL8A1P27658 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL8A1P27658 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.41■□□□□ 0.38
COL8A1P27658 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.41■□□□□ 0.38
COL8A1P27658 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 AC246785.2-201ENST00000432512 513 ntBASIC17.41■□□□□ 0.38
COL8A1P27658 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.41■□□□□ 0.38
COL8A1P27658 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.41■□□□□ 0.38
COL8A1P27658 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.41■□□□□ 0.38
COL8A1P27658 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.41■□□□□ 0.38
COL8A1P27658 AL031985.4-201ENST00000642138 673 ntBASIC17.41■□□□□ 0.38
COL8A1P27658 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
COL8A1P27658 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.41■□□□□ 0.38
COL8A1P27658 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL8A1P27658 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
COL8A1P27658 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL8A1P27658 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.4■□□□□ 0.38
COL8A1P27658 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.4■□□□□ 0.38
COL8A1P27658 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.4■□□□□ 0.38
COL8A1P27658 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.4■□□□□ 0.38
COL8A1P27658 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.4■□□□□ 0.38
COL8A1P27658 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.4■□□□□ 0.38
COL8A1P27658 AP000347.1-202ENST00000435868 847 ntBASIC17.4■□□□□ 0.38
COL8A1P27658 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 FAM207BP-201ENST00000447172 505 ntBASIC17.4■□□□□ 0.38
COL8A1P27658 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.4■□□□□ 0.38
COL8A1P27658 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.4■□□□□ 0.38
COL8A1P27658 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.4■□□□□ 0.38
COL8A1P27658 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL8A1P27658 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL8A1P27658 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL8A1P27658 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL8A1P27658 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL8A1P27658 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.39■□□□□ 0.38
COL8A1P27658 AC233723.2-201ENST00000623798 2106 ntBASIC17.39■□□□□ 0.38
COL8A1P27658 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL8A1P27658 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.39■□□□□ 0.37
COL8A1P27658 FSCN1P1-201ENST00000568912 1481 ntBASIC17.39■□□□□ 0.37
COL8A1P27658 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.39■□□□□ 0.37
COL8A1P27658 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL8A1P27658 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.39■□□□□ 0.37
COL8A1P27658 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.39■□□□□ 0.37
COL8A1P27658 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.39■□□□□ 0.37
COL8A1P27658 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
COL8A1P27658 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 AC097488.1-201ENST00000507834 756 ntBASIC17.39■□□□□ 0.37
COL8A1P27658 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.39■□□□□ 0.37
COL8A1P27658 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.39■□□□□ 0.37
COL8A1P27658 AL691432.3-201ENST00000621860 400 ntBASIC17.39■□□□□ 0.37
COL8A1P27658 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.39■□□□□ 0.37
COL8A1P27658 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL8A1P27658 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL8A1P27658 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.38■□□□□ 0.37
COL8A1P27658 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 AP005242.2-201ENST00000580065 1175 ntBASIC17.38■□□□□ 0.37
COL8A1P27658 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL8A1P27658 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.38■□□□□ 0.37
COL8A1P27658 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms