Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC009303.1-201ENST00000426307 352 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC083806.1-201ENST00000468934 316 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 MYL6P4-201ENST00000477911 453 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC079594.1-201ENST00000489757 331 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC008417.1-201ENST00000510014 565 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 RNU2-45P-201ENST00000516068 187 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 RNA5SP75-201ENST00000516841 111 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 OR9L1P-201ENST00000529493 933 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AP000662.1-201ENST00000530952 487 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC068790.1-201ENST00000536166 355 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 ATP5J2P4-201ENST00000538774 267 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 EEF1A1P17-201ENST00000547505 1275 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 CCDC58P1-201ENST00000578567 430 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 CTSLP2-201ENST00000580501 394 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 MIR1273F-201ENST00000580581 99 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC024451.4-201ENST00000602578 752 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC027271.1-201ENST00000610270 610 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC073488.7-201ENST00000633785 778 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 OR7E161P-202ENST00000641994 1033 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AL139384.2-201ENST00000613809 3590 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 OR5AU1-201ENST00000304418 1199 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 SNORA70.5-201ENST00000365519 135 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 EIF4A1P2-201ENST00000422633 1220 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC009237.4-201ENST00000441078 238 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 WBP1LP1-201ENST00000460451 896 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC008620.1-201ENST00000468453 592 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 RN7SL143P-201ENST00000496780 297 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC106760.2-201ENST00000504159 619 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC073648.3-201ENST00000504939 925 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AL591767.3-201ENST00000554632 525 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 RPS7P1-201ENST00000571702 585 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC006116.6-201ENST00000593258 1103 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 Z93930.3-201ENST00000607919 749 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 RACGAP1P-201ENST00000550663 1879 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 AP000547.3-204ENST00000588548 2523 ntBASIC5.93□□□□□ -1.46
NKX3-1Q99801 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.93□□□□□ -1.46
NKX3-1Q99801 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NKX3-1Q99801 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
NKX3-1Q99801 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 RBMY1A3P-201ENST00000382670 1404 ntBASIC5.92□□□□□ -1.46
NKX3-1Q99801 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NKX3-1Q99801 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms