Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.4□□□□□ -1.39
SOX3P41225 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
SOX3P41225 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SOX3P41225 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
SOX3P41225 AC129502.1-201ENST00000623261 1654 ntBASIC6.39□□□□□ -1.39
SOX3P41225 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SOX3P41225 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 RN7SKP118-201ENST00000364331 330 ntBASIC6.39□□□□□ -1.39
SOX3P41225 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC6.39□□□□□ -1.39
SOX3P41225 PSMC1P2-201ENST00000423961 1204 ntBASIC6.39□□□□□ -1.39
SOX3P41225 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC6.39□□□□□ -1.39
SOX3P41225 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.39□□□□□ -1.39
SOX3P41225 RPL3P11-201ENST00000434028 1146 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 AL034399.1-201ENST00000451535 380 ntBASIC6.39□□□□□ -1.39
SOX3P41225 RPS26P11-201ENST00000463445 348 ntBASIC6.39□□□□□ -1.39
SOX3P41225 RPS26P6-201ENST00000475156 348 ntBASIC6.39□□□□□ -1.39
SOX3P41225 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 RN7SL655P-201ENST00000486087 298 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 MTCYBP44-201ENST00000514835 823 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 HMGN1P26-201ENST00000558737 303 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC068408.1-201ENST00000577406 1144 ntBASIC6.39□□□□□ -1.39
SOX3P41225 MIR378C-201ENST00000578683 81 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 AC079414.3-201ENST00000612986 1090 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 MRPL57P3-201ENST00000619218 176 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC106782.7-201ENST00000624024 418 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC133555.5-201ENST00000624430 418 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC073857.1-201ENST00000625082 1054 ntBASIC6.39□□□□□ -1.39
SOX3P41225 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.39□□□□□ -1.39
SOX3P41225 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 CDY5P-201ENST00000411487 1580 ntBASIC6.39□□□□□ -1.39
SOX3P41225 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 CDY9P-201ENST00000451397 1580 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.39□□□□□ -1.39
SOX3P41225 VN2R1P-201ENST00000449668 1743 ntBASIC6.39□□□□□ -1.39
SOX3P41225 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 AC073342.2-201ENST00000595842 1800 ntBASIC6.39□□□□□ -1.39
SOX3P41225 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SOX3P41225 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
SOX3P41225 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 OR10D1P-201ENST00000355343 936 ntBASIC6.38□□□□□ -1.39
SOX3P41225 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX3P41225 BTG3P1-201ENST00000435859 716 ntBASIC6.38□□□□□ -1.39
SOX3P41225 HMGN1P6-201ENST00000438508 291 ntBASIC6.38□□□□□ -1.39
SOX3P41225 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC6.38□□□□□ -1.39
SOX3P41225 PPIAP32-201ENST00000449940 472 ntBASIC6.38□□□□□ -1.39
SOX3P41225 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 RPSAP24-201ENST00000461543 873 ntBASIC6.38□□□□□ -1.39
SOX3P41225 RN7SL372P-201ENST00000461982 298 ntBASIC6.38□□□□□ -1.39
SOX3P41225 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 RN7SL379P-201ENST00000479912 293 ntBASIC6.38□□□□□ -1.39
SOX3P41225 AC096743.1-201ENST00000485172 319 ntBASIC6.38□□□□□ -1.39
SOX3P41225 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 AC131935.1-201ENST00000524621 333 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms