Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CUBNP3-201ENST00000457461 1784 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 BRD7P1-201ENST00000557705 1915 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 RNA5SP512-201ENST00000364550 120 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 RN7SKP47-201ENST00000365347 328 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 TYMSP1-201ENST00000407851 869 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 RN7SKP148-201ENST00000410179 275 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL157698.1-201ENST00000415190 1011 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC073900.1-201ENST00000429766 776 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 FTLP17-201ENST00000432567 525 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC105052.2-201ENST00000434317 794 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 PHB2P1-201ENST00000434943 890 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL604028.2-201ENST00000437848 788 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC010878.1-201ENST00000456500 1047 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 RPLP0P1-201ENST00000457002 361 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 RPL34P34-201ENST00000465389 354 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 TUBBP11-201ENST00000472255 252 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC091917.2-201ENST00000505002 744 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC134698.1-201ENST00000511619 643 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 OXR1-212ENST00000521592 993 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 EEF1B2P1-201ENST00000567221 672 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 MIR5095-201ENST00000578844 88 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL589765.5-201ENST00000596133 515 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL161912.3-201ENST00000605404 628 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC139792.1-201ENST00000607051 647 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC116165.3-201ENST00000614524 400 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC009120.2-204ENST00000621548 2032 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL109924.4-201ENST00000623089 670 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AC016542.3-201ENST00000623520 619 ntBASIC5.95□□□□□ -1.46
NKX3-1Q99801 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
NKX3-1Q99801 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
NKX3-1Q99801 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 AC007114.2-201ENST00000576014 4281 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 DDX10P2-201ENST00000417796 2614 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC5.94□□□□□ -1.46
NKX3-1Q99801 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 RNU4-81P-201ENST00000363561 144 ntBASIC5.94□□□□□ -1.46
NKX3-1Q99801 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NKX3-1Q99801 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms