Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 RPL9P21-201ENST00000392269 505 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL354893.1-201ENST00000433735 348 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 HBG2-204ENST00000444587 307 ntTSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 SRP68P2-201ENST00000456184 254 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 RN7SL834P-201ENST00000461450 286 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL133372.1-201ENST00000493565 745 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC147055.1-201ENST00000509261 750 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 IGKV1D-32-201ENST00000517449 318 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AP003168.1-201ENST00000530091 307 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC007537.1-201ENST00000539347 327 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC091304.5-201ENST00000568969 158 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 RN7SL689P-201ENST00000577215 297 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 SIGLEC31P-201ENST00000594237 551 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC012467.1-201ENST00000607740 256 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL121782.1-201ENST00000611242 413 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC016911.1-201ENST00000613297 452 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AC005839.1-201ENST00000624148 3213 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 RFC1-217ENST00000639695 867 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 AL034417.4-202ENST00000642135 2236 ntBASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CDK5RAP3Q96JB5 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC007938.1-201ENST00000562524 2902 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SNORA11D-201ENST00000408548 128 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SNORA11E-201ENST00000408778 128 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 FDPSP6-201ENST00000425091 512 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SNRPEP5-201ENST00000425442 278 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 GAPDHP16-201ENST00000448152 962 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AL135933.1-201ENST00000498657 802 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 DCAF13P2-201ENST00000514188 555 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC011447.2-201ENST00000592921 283 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AL353807.4-201ENST00000604995 257 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AC073389.3-201ENST00000609434 935 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AL162574.2-201ENST00000614618 657 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 AL359263.1-201ENST00000441188 2796 ntBASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC7.81□□□□□ -1.16
CDK5RAP3Q96JB5 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms