Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC096708.2-201ENST00000577676 512 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC011193.2-201ENST00000582638 367 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 AL353807.4-201ENST00000604995 257 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC079791.1-201ENST00000605356 973 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 RN7SL778P-201ENST00000607160 297 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 pRNA.9-201ENST00000618609 89 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 AC002094.5-201ENST00000623773 629 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 CDY10P-201ENST00000452415 1567 ntBASIC6.01□□□□□ -1.45
NKX3-1Q99801 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.01□□□□□ -1.45
NKX3-1Q99801 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
NKX3-1Q99801 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6□□□□□ -1.45
NKX3-1Q99801 NEK2P4-201ENST00000425793 1329 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AL512310.3-201ENST00000547023 1335 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6□□□□□ -1.45
NKX3-1Q99801 CNTRL-202ENST00000373844 713 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 RN7SKP85-201ENST00000411349 318 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 NPM1P36-201ENST00000415681 835 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 UQCRHP1-204ENST00000424609 274 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 LSM3P3-201ENST00000436601 306 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 TAAR3P-201ENST00000466706 1078 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 TAAR3P-202ENST00000481759 1025 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC6□□□□□ -1.45
NKX3-1Q99801 TRIM36-IT1-201ENST00000503723 881 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6□□□□□ -1.45
NKX3-1Q99801 AC103855.4-201ENST00000533158 265 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6□□□□□ -1.45
NKX3-1Q99801 AL135978.1-201ENST00000553618 1266 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC024614.1-201ENST00000577546 307 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC015818.6-201ENST00000584274 634 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC139493.1-201ENST00000604368 397 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AL139123.1-201ENST00000612008 430 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 FRG2MP-201ENST00000613317 856 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 BX005040.2-201ENST00000620504 370 ntBASIC6□□□□□ -1.45
NKX3-1Q99801 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6□□□□□ -1.45
NKX3-1Q99801 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
NKX3-1Q99801 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6□□□□□ -1.45
NKX3-1Q99801 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC093829.1-201ENST00000506662 1618 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 WBP11P1-201ENST00000562560 1931 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AC022905.1-201ENST00000503430 3048 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
NKX3-1Q99801 RNU6-1017P-201ENST00000363613 106 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 RN7SKP257-201ENST00000364525 309 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 RPL12P1-201ENST00000374520 498 ntBASIC5.99□□□□□ -1.45
NKX3-1Q99801 NOX4-203ENST00000375979 816 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
NKX3-1Q99801 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms