Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 SLC25A1P4-201ENST00000567977 778 ntBASIC27.78■■■□□ 2.04
MSH6P52701 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
MSH6P52701 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC27.78■■■□□ 2.04
MSH6P52701 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
MSH6P52701 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
MSH6P52701 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC27.77■■■□□ 2.04
MSH6P52701 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC27.77■■■□□ 2.04
MSH6P52701 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC27.77■■■□□ 2.04
MSH6P52701 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
MSH6P52701 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.04
MSH6P52701 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
MSH6P52701 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
MSH6P52701 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
MSH6P52701 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
MSH6P52701 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC27.76■■■□□ 2.03
MSH6P52701 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC27.76■■■□□ 2.03
MSH6P52701 CYGB-204ENST00000589342 815 ntTSL 3 BASIC27.76■■■□□ 2.03
MSH6P52701 AC069148.1-201ENST00000608741 768 ntBASIC27.76■■■□□ 2.03
MSH6P52701 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC27.76■■■□□ 2.03
MSH6P52701 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC27.76■■■□□ 2.03
MSH6P52701 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 ANKRD20A18P-201ENST00000359341 492 ntBASIC27.75■■■□□ 2.03
MSH6P52701 CCR12P-201ENST00000446203 998 ntBASIC27.75■■■□□ 2.03
MSH6P52701 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC27.75■■■□□ 2.03
MSH6P52701 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 AC116407.4-201ENST00000623319 1061 ntBASIC27.75■■■□□ 2.03
MSH6P52701 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC27.75■■■□□ 2.03
MSH6P52701 AC005332.1-201ENST00000577698 1310 ntBASIC27.75■■■□□ 2.03
MSH6P52701 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC27.75■■■□□ 2.03
MSH6P52701 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
MSH6P52701 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC27.75■■■□□ 2.03
MSH6P52701 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
MSH6P52701 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
MSH6P52701 CALM3-202ENST00000391918 702 ntTSL 2 BASIC27.74■■■□□ 2.03
MSH6P52701 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC27.74■■■□□ 2.03
MSH6P52701 AL671277.2-201ENST00000458060 996 ntBASIC27.74■■■□□ 2.03
MSH6P52701 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC27.74■■■□□ 2.03
MSH6P52701 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC27.74■■■□□ 2.03
MSH6P52701 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC27.74■■■□□ 2.03
MSH6P52701 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
MSH6P52701 AP000692.2-201ENST00000608391 879 ntBASIC27.74■■■□□ 2.03
MSH6P52701 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
MSH6P52701 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
MSH6P52701 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
MSH6P52701 AC011484.1-201ENST00000377652 1995 ntBASIC27.74■■■□□ 2.03
MSH6P52701 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
MSH6P52701 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.74■■■□□ 2.03
MSH6P52701 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
MSH6P52701 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
MSH6P52701 HOMER2P1-201ENST00000455653 964 ntBASIC27.73■■■□□ 2.03
MSH6P52701 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC27.73■■■□□ 2.03
MSH6P52701 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC27.73■■■□□ 2.03
MSH6P52701 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC27.73■■■□□ 2.03
MSH6P52701 AC011558.1-201ENST00000623459 338 ntBASIC27.73■■■□□ 2.03
MSH6P52701 AC141257.4-201ENST00000634557 245 ntBASIC27.73■■■□□ 2.03
MSH6P52701 AC136944.6-201ENST00000634818 245 ntBASIC27.73■■■□□ 2.03
MSH6P52701 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC27.73■■■□□ 2.03
MSH6P52701 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
MSH6P52701 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 GALC-202ENST00000393568 2054 ntTSL 2 BASIC27.73■■■□□ 2.03
MSH6P52701 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.73■■■□□ 2.03
MSH6P52701 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
MSH6P52701 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC27.73■■■□□ 2.03
MSH6P52701 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH6P52701 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC27.73■■■□□ 2.03
MSH6P52701 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC27.73■■■□□ 2.03
MSH6P52701 AC010653.2-201ENST00000623505 997 ntBASIC27.73■■■□□ 2.03
MSH6P52701 AC131212.4-201ENST00000623606 975 ntBASIC27.73■■■□□ 2.03
MSH6P52701 AC133561.1-201ENST00000568600 2415 ntBASIC27.72■■■□□ 2.03
MSH6P52701 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
MSH6P52701 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC27.72■■■□□ 2.03
MSH6P52701 PTBP1P-201ENST00000554374 1601 ntBASIC27.72■■■□□ 2.03
MSH6P52701 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
MSH6P52701 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
MSH6P52701 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
MSH6P52701 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC27.72■■■□□ 2.03
MSH6P52701 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
MSH6P52701 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC27.72■■■□□ 2.03
MSH6P52701 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC27.72■■■□□ 2.03
MSH6P52701 MIR2861-201ENST00000636310 90 ntBASIC27.72■■■□□ 2.03
MSH6P52701 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC27.72■■■□□ 2.03
MSH6P52701 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms