Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Rfx1P48377 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx1P48377 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.59■□□□□ 0.89
Rfx1P48377 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx1P48377 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC20.59■□□□□ 0.89
Rfx1P48377 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC20.59■□□□□ 0.89
Rfx1P48377 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Rfx1P48377 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.58■□□□□ 0.89
Rfx1P48377 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.58■□□□□ 0.89
Rfx1P48377 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Rfx1P48377 Gm13401-201ENSMUST00000117074 291 ntBASIC20.58■□□□□ 0.89
Rfx1P48377 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.58■□□□□ 0.89
Rfx1P48377 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Rfx1P48377 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rfx1P48377 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Rfx1P48377 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Rfx1P48377 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rfx1P48377 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rfx1P48377 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC20.57■□□□□ 0.88
Rfx1P48377 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Rfx1P48377 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Gm37166-201ENSMUST00000195473 2474 ntBASIC20.57■□□□□ 0.88
Rfx1P48377 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Rfx1P48377 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Rfx1P48377 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx1P48377 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
Rfx1P48377 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
Rfx1P48377 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.56■□□□□ 0.88
Rfx1P48377 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx1P48377 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
Rfx1P48377 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Rfx1P48377 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Rfx1P48377 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.55■□□□□ 0.88
Rfx1P48377 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.55■□□□□ 0.88
Rfx1P48377 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Rfx1P48377 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx1P48377 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Rfx1P48377 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC20.54■□□□□ 0.88
Rfx1P48377 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Rfx1P48377 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Rfx1P48377 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Rfx1P48377 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Rfx1P48377 Mir2861-201ENSMUST00000175539 82 ntBASIC20.54■□□□□ 0.88
Rfx1P48377 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Rfx1P48377 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx1P48377 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx1P48377 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms